Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1197 a.a., transcription-repair coupling factor (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  653 bits (1685), Expect = 0.0
 Identities = 407/1075 (37%), Positives = 613/1075 (57%), Gaps = 66/1075 (6%)

Query: 93   RISRLYQLPSLT--RGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRLQLENS 150
            R++ LY L      RGI I+ V  LL +  P D    H L + RG+  S + +  Q  + 
Sbjct: 125  RMASLYALSRREHPRGI-IISVDNLLPKLPPVDIFEHHELRLARGEDMSPELVLDQAIDW 183

Query: 151  SYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDE 210
             +     V  PGE A RG ILD+FP G   P R++FF D ++ IR FD  +QRS+A ++E
Sbjct: 184  GFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLEDIRLFDATSQRSLASLEE 243

Query: 211  IRLLPAHEFPTTAAAIEEFRNRWRQRFE-----------ARREPESVYSQVSKGTWPAGI 259
             RLLP           E    RW+Q  +             R  E   + +  G W    
Sbjct: 244  FRLLPVAPVVGCREYREAAARRWKQLRKDGVIDGEQAAALARMAEGEVTGLLPGAW---- 299

Query: 260  EYWQPLFFEHSETLFDYLPANSQLLVV--GELEKAIDQFLTD----VDYRYDQRNIDPLR 313
                   +E++  + D+LP ++  L+    +L  A++   T+    +D +YD+  +   R
Sbjct: 300  -------YENATWMEDWLPRDAVWLLPDRADLSTALEAARTNWEALLDRQYDEHRLRQPR 352

Query: 314  PLL-----PPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNA---QVQPLPVLAVE 365
            PL+          W  +    AHF+ L  + +  + ++L   R++A        P + V+
Sbjct: 353  PLVLRDADEAQAAW--RGRSVAHFERLV-MGVERTGVDLPERRLHAFRDLFAATPSVPVD 409

Query: 366  HQN--KEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQT 423
                 +  + ALRQ++ +   +++ S  S+  R   L+L ++  +RP  +  +S A +  
Sbjct: 410  EDRPWQRLVTALRQWTSE-RRQVVLSFASDRSRRKFLKLAEQDGVRPNLR--YSPADRGL 466

Query: 424  EKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELK 483
              Y+LV        +  DN +       ++G+ V+Q +  +  +  T +   +    +L 
Sbjct: 467  --YALVAPFRAGIDLAWDNVL-------VIGEDVLQPKADRQPRVPTGAFLGLDKYDDLS 517

Query: 484  PGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEE 543
            PG  +VH D+G+GR+ GL  ++ GG+ +++++LEY  E +LY+PV  L+LI R+ GG + 
Sbjct: 518  PGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGGDDS 577

Query: 544  AAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFP 603
               L KLGG  W   + KA + +  +AA+L+ +YA R++  G+++    E Y  F+A+F 
Sbjct: 578  VPSLDKLGGSGWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEASFG 637

Query: 604  FEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPT 663
            FEET DQA AI  VL DM + + MDRLVCGDVGFGKTEVA+RAAF A   G+QVA+L PT
Sbjct: 638  FEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALLCPT 697

Query: 664  TLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEI 723
            T+LA+QH++ FR R A  P+ V +LSRF S ++QK++LQ  A G++DIL+GTH+LLS ++
Sbjct: 698  TVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLSDDV 757

Query: 724  RFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIAT 783
            +  +LGLL++DEE RFGVR KEK+K  R +VD LTLTATPIPRTL ++MSG+R+LS+I T
Sbjct: 758  QLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSVIET 817

Query: 784  PPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARI 843
             P  R  + T + + + + +R+ + REI R GQV+++HN+V+ +++VA  +  LVP AR+
Sbjct: 818  APPERKPVATALIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPTARV 877

Query: 844  TVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQ 903
             +AHGQM ERELE  M+ F+H   ++LVCT I+E+G+D P ANT+I+D+A   GL QL+Q
Sbjct: 878  GMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQ 937

Query: 904  LRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGEL 963
            LRGRVGRS  QAYA  +    + + + A +R+  I  L+ LGAGF +A  DL +RGAG +
Sbjct: 938  LRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGAGNI 997

Query: 964  LGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMR--LPALLPEEY 1021
            LGE QSG +  +G  LY+EMLE+ V  LK G  P      RE  E E+   L A +PE Y
Sbjct: 998  LGEVQSGHMTRLGLDLYLEMLEEEVARLK-GAPP------RESVEPELNIGLAAHIPETY 1050

Query: 1022 IPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVR 1081
            I D   RL  YK ++S      L ++++EL DRFG  P    N LA+  LK     L+V 
Sbjct: 1051 IGDARERLKFYKALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQVV 1110

Query: 1082 KIEAH-ERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSA 1135
            + + H ER   V       I P  LV  + ++     +  P+ L+  +  V  SA
Sbjct: 1111 RADIHPERLRLVWDERQTVIAPERLVAWVAARQGKARLVPPSTLEVRMEAVPGSA 1165