Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

 Score = 1202 bits (3110), Expect = 0.0
 Identities = 613/1144 (53%), Positives = 820/1144 (71%), Gaps = 20/1144 (1%)

Query: 17   DKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQF------------ 64
            D +  G LHG+S ALAI E A AH   TL+       A++L   +  F            
Sbjct: 25   DHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEEDGPAV 84

Query: 65   --SHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPR 122
                 E+   PDWETLPYD FSPHQDIIS RI  L++LP+ + G+ +VP  TL+ R  P 
Sbjct: 85   SDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMHRLPPV 144

Query: 123  DFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPF 182
            ++L  +TL+++ G    ++  R+QLE + YRH + V+  GEYA RG+ILD+FPMG+S PF
Sbjct: 145  NYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMGASQPF 204

Query: 183  RIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARRE 242
            RID FDDEI+T+RTFDP+ QRSI  ++ I LLPA EFP    A   FR+RW ++F    +
Sbjct: 205  RIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQFPDADK 264

Query: 243  PESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDY 302
               +Y  V+ G  P GIEY+ PLFF+ + TLFDYLP  + +     L  A+  F ++   
Sbjct: 265  DTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLNDAVSHFDSETRN 324

Query: 303  RYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVL 362
            RY+ R  D LRP+LPP  L+L+++ELF   K  P+V +++   +  AG +N     LP +
Sbjct: 325  RYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAETKDA-AGSVNCPTTTLPDI 383

Query: 363  AVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELL--QRIKLRPQSQNDFSLAC 420
            A++ +  +P   L++F  +F G ++   ES GRREAL+E L  Q ++L+  S     L  
Sbjct: 384  AMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGWQAFLDD 443

Query: 421  QQTEKYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLA 480
            +++   ++ +   E+G +  ++ VALI E+ L G+RV+QRRR++  K     DA  R+L+
Sbjct: 444  KESS-VAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRRE--KPTETDDAGFRDLS 500

Query: 481  ELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGG 540
            EL+ G PVVHIDHG+GRYLGL+T+   G  SE++ML Y   +KLYVPVSSL+LISRY+G 
Sbjct: 501  ELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISRYAGN 560

Query: 541  AEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKA 600
              E A LHKLG + W  A++KA EK+RD AAELLDVYA+RE + GF F   +E Y  F A
Sbjct: 561  DTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYRAFAA 620

Query: 601  TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVL 660
             FPFEET DQ +AI +V  DM   + MDRLVCGDVGFGKTEVAMRAAF+AT +GKQVAVL
Sbjct: 621  GFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQVAVL 680

Query: 661  VPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLS 720
            VPTTLLAQQH+E+FRDRF++ P++VE+LSRF++A +  + L+ V +G+ DI++GTHKLL 
Sbjct: 681  VPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTHKLLQ 740

Query: 721  SEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSI 780
             +I+F +LGL+I+DEEHRFGV+QKE++KA+RA+VD+L LTATPIPRTLNMAM  +RDLSI
Sbjct: 741  GDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLRDLSI 800

Query: 781  IATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPE 840
            IATPPARRL++KTFVRQ ++++++EA+LREI+RGGQVYFLHN V TI+K A DL  L+PE
Sbjct: 801  IATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRSLIPE 860

Query: 841  ARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQ 900
            AR+ VAHGQMRER+LEK+M+DFYH+RFN+LVCTTIIETGIDVP+ANTII++RAD  GLAQ
Sbjct: 861  ARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKFGLAQ 920

Query: 901  LHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGA 960
            LHQLRGRVGRSHHQAYAYLLTPPPK+IT DA KRL+AI+  +DLGAGF LATHDLEIRGA
Sbjct: 921  LHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLEIRGA 980

Query: 961  GELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEE 1020
            GELLGEEQSGQI+S+GFTLYM++L++AV+A++ G+ P  D  L   TE+ +R+PAL+PE+
Sbjct: 981  GELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPALIPED 1040

Query: 1021 YIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKV 1080
            Y+PD++ RL +YK+IASV S + L EL+VE+IDRFG LPD A NL+   EL+L A  L +
Sbjct: 1041 YLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAEALGI 1100

Query: 1081 RKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFV 1140
             K++A +    +EF  +  ++P+ LVK +QS P    ++G    +F L       ++  +
Sbjct: 1101 VKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGKLDGI 1160

Query: 1141 ADML 1144
            + ML
Sbjct: 1161 SRML 1164