Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ATP-dependent DNA helicase RecG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  241 bits (615), Expect = 1e-67
 Identities = 151/412 (36%), Positives = 219/412 (53%), Gaps = 19/412 (4%)

Query: 573 LLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVC 632
           +L +  +  +      H   +    F  + PF+ T  Q   +  +  D+ Q   M RLV 
Sbjct: 231 MLRLRQRSNLDAAVTMHATGQLLNPFLTSLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 290

Query: 633 GDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFK 692
           GDVG GKT VA  AA  A +NG QVA++ PT LLA+QH  NF   F  L ++V  L+   
Sbjct: 291 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHAANFAAWFEPLGLKVGWLAGKL 350

Query: 693 SAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRA 752
             K + Q L D+  G   I++GTH +   ++ F  L L+I+DE+HRFGV Q+  ++    
Sbjct: 351 KGKARAQSLADIESGAAQIVIGTHAIFQQQVIFHKLALIIIDEQHRFGVHQRMGLREKGI 410

Query: 753 DVDI----LTLTATPIPRTLNMAMSGMRDLSII-ATPPARRLAIKTFVRQSEDSVIREAV 807
           +       L +TATPIPRTL M      D SII   PP R       +  S  + + E V
Sbjct: 411 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 470

Query: 808 LREIMRG-GQVYFLHNQVE--------TIDKVAADLEKLVPEARITVAHGQMRERELEKV 858
              ++    Q Y++   +E          +  A +L + +PE  I + HG+M+  E +K+
Sbjct: 471 RNSVITDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELTIGLVHGRMKSAEKQKI 530

Query: 859 MNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAY 918
           M DF     NLLV TT+IE G+DVP ++ +I++  + LGLAQLHQLRGRVGR    ++  
Sbjct: 531 MADFKAGTINLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 590

Query: 919 LLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
           LL   P  +++ A +RL  +    D   GF +A  DLEIRG GE+LG +Q+G
Sbjct: 591 LLYKAP--LSQTASQRLNVLRQSND---GFVIAQKDLEIRGPGEVLGTKQTG 637