Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1298 bits (3358), Expect = 0.0
 Identities = 662/1157 (57%), Positives = 858/1157 (74%), Gaps = 9/1157 (0%)

Query: 1    MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE 60
            MT  S L+    +     + +  + G   A+ +A L   H   TL+   D  TAL L  E
Sbjct: 1    MTHISALTPPVVKNGTQMQTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELE 60

Query: 61   VEQF---SHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQ 117
            +      +  +V LFPD ETLPYD+FSPHQD+IS R+  L Q+      + IVPV+TL+ 
Sbjct: 61   LNYLLAKTAIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITHAEHSVVIVPVTTLMM 120

Query: 118  RQSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMG 177
            R  P+ +L  +  ++K+GD + L  +R QL ++ Y  V+QV+  GE+A RGSILD+FP G
Sbjct: 121  RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 178  SSDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRF 237
             + P RI+ FDDE++TIR FDP+ QRS   ++ +RLLPA EFPT ++AIE FR R+R+RF
Sbjct: 181  VNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEFPTDSSAIEGFRQRYRRRF 240

Query: 238  EAR-REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQF 296
            E   +EPESVY  VS+   PAGIE + PLFF+   TLFDYLP N+QL+ +G++EK+    
Sbjct: 241  EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVSTLFDYLPKNTQLVTLGDIEKSARAH 300

Query: 297  LTDVDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQV 356
            L +V+ RY+ R +DPLRPLL P EL+L  +ELFA FK LP+ Q  +   +          
Sbjct: 301  LQEVEIRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFVAPNPDTNGVAAQIDA 360

Query: 357  QPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDF 416
            + LP ++  H+ K+PL AL+ ++EQ   +++FS ESEGRREALLELL +I+L+P   + F
Sbjct: 361  RALPEVSANHKLKQPLIALQDYAEQ-APRMLFSAESEGRREALLELLGKIQLKPSVFSHF 419

Query: 417  SLACQQTEKYSLVLGSAERGFIYG---DNQVALICESDLLGDRVIQRRRKKDRKNVTNSD 473
                Q   +  L++    RG + G      V++ICE++L G R+ Q+RR++ ++ ++N D
Sbjct: 420  DEFIQSDARLGLIVSPLSRGCLLGLGAQTAVSIICETELFGQRISQQRRREKQRQISN-D 478

Query: 474  AVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNL 533
             +I+NLAELK GQP+VH++HG+  Y GL TL+ GG+V+EY+ LEY    KLYVPVS+L+L
Sbjct: 479  TLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGIVAEYLQLEYSGGDKLYVPVSNLHL 538

Query: 534  ISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDRE 593
            ISRYS GA+    L+KLG + W KA+ KA EK+RDVAAELLDVYA+R+ +PG    ++ E
Sbjct: 539  ISRYSVGADGETHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCEINDE 598

Query: 594  QYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDN 653
            +YA F   FPFEET DQ  AI+AVL+DM    AMDRLVCGDVGFGKTEVAMRAAFVA ++
Sbjct: 599  EYAQFAQGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVND 658

Query: 654  GKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILV 713
            GKQV VLVPTTLLAQQH+ENF+DRFA+ P+ +EV+SRF++AKEQ Q+L+ + +GKVDI++
Sbjct: 659  GKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVI 718

Query: 714  GTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMS 773
            GTHKLL SE +F +LGLLI+DEEHRFGVRQKEK+KA+RA+VDILTLTATPIPRTLNMAMS
Sbjct: 719  GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMS 778

Query: 774  GMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAAD 833
            GMRDLSIIATPPA+RLA+KTFVR+S+ + +REA+LREI+RGGQVY+LHN VETI+K A D
Sbjct: 779  GMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQD 838

Query: 834  LEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRA 893
            +  L+PEAR+ VAHGQMRER+LE+VM+DFYHQRFN+LVCTTIIETGIDVP+ANTII++RA
Sbjct: 839  ISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERA 898

Query: 894  DSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATH 953
            D+ GLAQLHQLRGRVGRSHHQAYAYL+TP PK +T DA KRLEAI +LEDLGAGF LAT 
Sbjct: 899  DTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTTDARKRLEAIDALEDLGAGFMLATQ 958

Query: 954  DLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRL 1013
            DLEIRGAGELLG+EQSG I  +GF+LYMEMLE AV+ALK GKEP+L  +L +Q E+E+R+
Sbjct: 959  DLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRI 1018

Query: 1014 PALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKL 1073
            PALLPE+Y+ D+N RLS+YK+IAS  S++ L ELKVELIDRFG LPDA  NL+ +   K 
Sbjct: 1019 PALLPEDYVGDVNIRLSLYKRIASCDSEEALDELKVELIDRFGLLPDATKNLMEMTLYKH 1078

Query: 1074 NAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVER 1133
             A RL   KIE H +GG +EF  +  I+P F++ LLQSQP++  MDGP KLKF L     
Sbjct: 1079 QATRLGATKIEVHAKGGSIEFSQDHSIDPGFIIGLLQSQPQIYRMDGPNKLKFILSAETA 1138

Query: 1134 SARIQFVADMLKNFQQN 1150
              R+  V  +L+   Q+
Sbjct: 1139 KDRLALVKLLLEQLSQH 1155