Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score = 1463 bits (3788), Expect = 0.0
 Identities = 727/1137 (63%), Positives = 903/1137 (79%), Gaps = 5/1137 (0%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVALFPD 74
            AGD++ +G L GA+ A  +AE+A  H    +L  PD Q AL+L  E+ QF+ S VA   D
Sbjct: 13   AGDQRQLGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQFTDSMVAGLAD 72

Query: 75   WETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKR 134
            WETLPYD+FSPHQDIIS R++ LYQLP++ RG+ I+PVSTL+QR  P +FL  H L++K+
Sbjct: 73   WETLPYDSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPHNFLHGHALVMKK 132

Query: 135  GDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTI 194
            G   S D LR QL+++ YRHVDQV   GEYA+RG++LDLFPMGS  P+R+DFFDDEID++
Sbjct: 133  GQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSL 192

Query: 195  RTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGT 254
            R FD D+QR++ E+  I LLPAHEFPT  AAIE FR++WR RFE +R+ E +Y QVSKGT
Sbjct: 193  RLFDVDSQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRDAEHIYQQVSKGT 252

Query: 255  WPAGIEYWQPLFF-EHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNIDPLR 313
             PAGIEYWQPLFF E    LF Y PA + ++  G+LE + ++F  +   R++ R +DP+R
Sbjct: 253  LPAGIEYWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETRARFENRGVDPMR 312

Query: 314  PLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLA 373
            PLLP  +LWLR DELF+  K  P+VQL +  +  +A   N   Q L  LA++ QNK PL 
Sbjct: 313  PLLPTEQLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLHELAIQAQNKAPLD 372

Query: 374  ALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVLGSA 433
             LR+F E F+G +IFSVESEGRREAL E+L RIK+ P+  +   L         L++G+A
Sbjct: 373  NLRRFLESFSGPVIFSVESEGRREALGEMLARIKIAPK--HILRLEEATANGRYLMIGAA 430

Query: 434  ERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDH 493
            E GFI     +ALICESDLLG+RV   RR++D +   N D +IRNLAEL  GQPVVH++H
Sbjct: 431  EHGFIDSQRNLALICESDLLGERVA--RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488

Query: 494  GIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGE 553
            G+GRY G+ TLEAGG+  EY+ML Y N+AKLYVPVSSL+LISRY+GGAEE A LHKLGG+
Sbjct: 489  GVGRYAGMTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548

Query: 554  AWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMA 613
            AW +AR+KAAEKVRDVAAELLD+YA+R  K G+ F  D+EQY  F   FPFE T DQA A
Sbjct: 549  AWARARQKAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFETTPDQAQA 608

Query: 614  INAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFEN 673
            INAVLSDMCQ  AMDRLVCGDVGFGKTEVAMRAAF+A +N KQVAVLVPTTLLAQQHF+N
Sbjct: 609  INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDN 668

Query: 674  FRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIV 733
            FRDRFAN P+R+E+LSRF+SAKEQ QIL+ VA+GK+DIL+GTHKLL  +++  DLGLLIV
Sbjct: 669  FRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKLRDLGLLIV 728

Query: 734  DEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKT 793
            DEEHRFGVR KE++KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA+KT
Sbjct: 729  DEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788

Query: 794  FVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRER 853
            FVR+ +  V+REA+LRE++RGGQVY+L+N VE I K A  L +LVPEARI + HGQMRER
Sbjct: 789  FVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848

Query: 854  ELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHH 913
            ELE+VMNDF+HQRFN+LVCTTIIETGID+PTANTII++RAD  GLAQLHQLRGRVGRSHH
Sbjct: 849  ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908

Query: 914  QAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQ 973
            QAYA+LLTP PKA+T DA KRLEAIASLEDLGAGF LATHDLEIRGAGELLGE+QSG ++
Sbjct: 909  QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSME 968

Query: 974  SVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYK 1033
            ++GF+LYME+LE AV+ALK+G+EP+L+DL  +QTEVE+R+P+LLP+++IPD+NTRLS YK
Sbjct: 969  TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028

Query: 1034 QIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVE 1093
            ++AS  +++EL E+KVELIDRFG LPD A NLL IA L+  A +L +RK+E++E+GG +E
Sbjct: 1029 RVASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLESNEKGGTIE 1088

Query: 1094 FYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLKNFQQN 1150
            F    ++NPV+L+ LLQ QP+   +DGPT+LKF   L ER  R+++V   ++  ++N
Sbjct: 1089 FNEKNNVNPVWLISLLQKQPQHYRLDGPTRLKFMQDLAERKTRMEWVRQFMRQLEEN 1145