Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1157 a.a., transcription-repair coupling factor (mfd) from Sphingomonas koreensis DSMZ 15582

 Score =  767 bits (1981), Expect = 0.0
 Identities = 454/1092 (41%), Positives = 647/1092 (59%), Gaps = 42/1092 (3%)

Query: 33   IAELANAHTSHTLLAVPDPQTALKLLHEVEQF--SHSEVALFPDWETLPYDNFSPHQDII 90
            +A+LA A T+  +   PD ++A++ +     F     E+  FP W+ LPYD  SP   ++
Sbjct: 28   LADLARASTTGAVYIAPD-ESAMRAVASTAAFFAPELEIVQFPAWDCLPYDRASPTLRVM 86

Query: 91   SDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKLRLQLE 148
            ++R++ L  L   T    + +  V+   QR      + Q T  +  G+  SLDKL   L 
Sbjct: 87   AERMAALAALQGKTSKPRLILTTVNAATQRTLTPFRVRQMTARLAPGERISLDKLAALLS 146

Query: 149  NSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQRSIAEM 208
             + Y   D V   GE+A RG ++DLFP GS    R+DFF DEI+++RTFDP +QR+   +
Sbjct: 147  ANGYVRTDTVHDSGEFAVRGGLVDLFPSGSEQGLRLDFFGDEIESVRTFDPADQRTTGRV 206

Query: 209  DEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVSKGTWPAGIEYWQPLFFE 268
            D   LLPA E       I+ FR R+R++F A    + +Y  +S G   AG+E+W PLF E
Sbjct: 207  DGFTLLPASEALLDEDTIKRFRTRYREKFGATATGDPLYQAISDGRRLAGMEHWLPLFEE 266

Query: 269  HSETLFDYLPANSQLLV-VGELEKAIDQFLTDVDY-----RYDQRNIDPLRPL------L 316
              ETLF++LPA++ ++   G+   A ++F    DY     R    +    RPL      L
Sbjct: 267  RLETLFEHLPADAVIVRDAGDAGAAENRFEAIADYQANRVRAQSTDAGSYRPLGTDQLYL 326

Query: 317  PPNELWLRKDELFAHFKTLPQVQLTSSPIELRA-GRMNAQVQPLPVLAVEHQNKEPLAAL 375
             P E   R  E  AH  T      +++ ++    G  +   +      +     E LA L
Sbjct: 327  LPAEWDKRLKEAKAHLATPFHEPESATVLDFAVDGPRDFAPERAAGTNIYEAVAEHLAKL 386

Query: 376  RQFSEQFTGKIIFSVESEGRREALLELLQRIKLRP-------QSQNDFSLACQQTEKYSL 428
            R+  +    K I +  S G RE L  LL    L         Q     +   + +   +L
Sbjct: 387  RKAGK----KPILASYSIGSRERLKGLLADHGLPNAVFAESWQEALGVAAGGRDSGNVAL 442

Query: 429  VLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPV 488
            ++   + GF     +VAL+ E D+LGDR+++R ++K      ++DA +  LA L PG  V
Sbjct: 443  IVLPLDHGFT--SPEVALLTEQDMLGDRLVRRNKRKK-----STDAFLAELATLSPGDLV 495

Query: 489  VHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLH 548
            VH++HGIGRY GL  +       + V L Y    KLYVPV +L ++SRY G +EE A L 
Sbjct: 496  VHLEHGIGRYEGLTQIPVQKAPHDCVALTYAGGDKLYVPVENLEVLSRY-GSSEEGAALD 554

Query: 549  KLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETD 608
            +LGGEAW + + +  E++R++A EL+   A R ++PG     D   Y  F   FPF ETD
Sbjct: 555  RLGGEAWQRRKSRMKERIREIAGELIATAAARAVRPGEVLEPDPGGYPAFVDRFPFTETD 614

Query: 609  DQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQ 668
            DQ  AI  VL D+   + MDRLV GDVGFGKTEVA+RAAFVA   G+QVAV+ PTTLLA+
Sbjct: 615  DQDRAIGDVLEDLAAGRPMDRLVVGDVGFGKTEVALRAAFVAAMAGQQVAVVCPTTLLAR 674

Query: 669  QHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADL 728
            QHF NF  RF   PIR+  LSR   A E K   + +  G++DI+VGTH +L+  I F  L
Sbjct: 675  QHFTNFVQRFEGFPIRIGRLSRLVPAAEAKATREGLESGQIDIVVGTHAVLAKGIEFKRL 734

Query: 729  GLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 788
            GL+IVDEE RFGV  KE++K ++ADV +LTLTATPIPRTL MAMSG+R+LS+I TPP  R
Sbjct: 735  GLVIVDEEQRFGVTHKERLKGLKADVHVLTLTATPIPRTLQMAMSGLRELSVIQTPPVDR 794

Query: 789  LAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHG 848
            LA++T+V   +  V+REA+LRE  RGGQ + +  ++  +  +   L + VPE R  VAHG
Sbjct: 795  LAVRTYVMPWDPVVLREALLREHYRGGQSFLVTPRIADLPDIEKFLREEVPEVRYVVAHG 854

Query: 849  QMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRV 908
            QM   E+E+ M+ FY +++ +LV TTIIE+G+D+P+ANT+I++RAD  GLAQL+QLRGRV
Sbjct: 855  QMAAGEVEERMSAFYDKKYEVLVSTTIIESGLDIPSANTMIINRADRFGLAQLYQLRGRV 914

Query: 909  GRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQ 968
            GR+  +AYAY+ T P + +T+ A KRL+ ++ LE LGAGF LA+HDL+IRGAG LLG+EQ
Sbjct: 915  GRAKTRAYAYMTTAPQRLMTEAAEKRLKVLSDLESLGAGFQLASHDLDIRGAGNLLGDEQ 974

Query: 969  SGQIQSVGFTLYMEMLEQAVEALKSG--KEPALDDLLREQTEVEMRLPALLPEEYIPDIN 1026
            SG I+ VG+ LY  MLE+A+   K+G   +    DL     ++ +  P L+PE ++PD++
Sbjct: 975  SGHIKEVGYELYQSMLEEAIMDAKAGGLADARPRDL---SPQITVDAPILIPEGFVPDLD 1031

Query: 1027 TRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAH 1086
             R+ +Y+++  V  K  + E   E+IDRFGKLP+   NLL + E KLNA R  + KI+  
Sbjct: 1032 LRMGLYRRLNEVEDKRGIDEFAAEMIDRFGKLPEETENLLLLIEAKLNAKRACIAKIDVG 1091

Query: 1087 ERGGYVEFYPNA 1098
             +G  V F+ ++
Sbjct: 1092 PKGALVSFHEDS 1103