Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1152 a.a., transcription-repair coupling factor from Dyella japonica UNC79MFTsu3.2

 Score = 1174 bits (3037), Expect = 0.0
 Identities = 606/1127 (53%), Positives = 808/1127 (71%), Gaps = 14/1127 (1%)

Query: 25   HGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSEVAL-FPDWETLPYDNF 83
            HG++ AL +AE A AH    +    D Q A  L  E+  F+     L FPDWETLPYD F
Sbjct: 24   HGSARALLVAETARAHAGLLVAVTRDTQRAHALEDELRLFAGDLPVLHFPDWETLPYDIF 83

Query: 84   SPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTLIVKRGDHFSLDKL 143
            SPH +I+S RI+ LY LPS  RG+ +VPV+TL+QR +P   +    L++K+G    L   
Sbjct: 84   SPHPEIVSQRIATLYSLPSTRRGVLVVPVATLMQRIAPHSHVTGSGLVLKKGQKLDLSTE 143

Query: 144  RLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTFDPDNQR 203
            + +LE + YR+V QV  PG++A RG+++D++PMG+ +P+RI+ FDDE+++IR+FDP+ QR
Sbjct: 144  QRRLEAAGYRNVPQVAEPGDFAVRGALIDIYPMGAGEPYRIELFDDEVESIRSFDPETQR 203

Query: 204  SIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRF--EARREPESVYSQVSKGTWPAGIEY 261
            S   ++++ LLPA EFP T  A ++FR + R+RF  + RR P  +Y  + +G  P GIEY
Sbjct: 204  SQQPVEKVELLPAREFPLTEQAAKDFRGKLRERFPIDVRRCP--LYQDMKEGVTPGGIEY 261

Query: 262  WQPLFFEHSETLFDYLPANSQLLV-VGELEKAIDQFLTDVDYRYDQRNIDPLRPLLPPNE 320
            + PLFFE + TLFDYL   +  L+  G LE A +QF      RYDQR  D  RP+LPP E
Sbjct: 262  YLPLFFEQTATLFDYLGDGAVFLLGEGTLESA-EQFWQQTGERYDQRAHDIERPVLPPAE 320

Query: 321  LWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKEPLAALRQFSE 380
            L+L  ++L        +V++ +S  E  A   +   QP P L +  + +EP  +LR F  
Sbjct: 321  LYLPPEQLREQLNRRLRVEVVASGHEHAA---DVGTQPAPELPLNRKGEEPGTSLRHFLA 377

Query: 381  QFTGKIIFSVESEGRREALLELLQRIKLRPQSQND---FSLACQQTEKYSLVLGSAERGF 437
             + G+++ + +S GRREAL+E L    L+P S +    F  A     K+++ +   E+GF
Sbjct: 378  SYPGRVLIAADSAGRREALIETLAAAGLKPDSIDGWPRFLAADGAGPKFAIAIAGLEQGF 437

Query: 438  IYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVHIDHGIGR 497
                  + ++ E +L G+RV +  RK+ R    + DA+IR+L EL  G P+VH+DHG+GR
Sbjct: 438  ALKSPAITVLTERELYGERV-RTERKRRRGAARDPDAIIRDLTELTIGAPIVHVDHGVGR 496

Query: 498  YLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKLGGEAWVK 557
            Y GL ++E GG   E++ +EY    KLYVPV+ L L+SRY+G A E A LH LGG+AW +
Sbjct: 497  YQGLVSMELGGTEGEFLTIEYAKGDKLYVPVAQLGLVSRYTGTAPELAPLHSLGGDAWER 556

Query: 558  ARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAV 617
            ARRKAAEKVRDVAAELL +YA+RE + G    +DR+    F ATFPFEET DQA AI+AV
Sbjct: 557  ARRKAAEKVRDVAAELLAIYAQREARGGQSLPIDRQLVEEFGATFPFEETPDQAQAIDAV 616

Query: 618  LSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDR 677
            L D+   +AMDR++CGDVGFGKTEVA+RAAF A   GKQVAVLVPTTLLAQQHF NF DR
Sbjct: 617  LGDLAAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAVLVPTTLLAQQHFRNFADR 676

Query: 678  FANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEH 737
            FA+ P+RV+VLSRFKS+KE  + L+ +ADG++D++VGTHKLL  +IRF DLGL+IVDEE 
Sbjct: 677  FADWPVRVDVLSRFKSSKEVNEALKRLADGQIDVIVGTHKLLQPDIRFKDLGLVIVDEEQ 736

Query: 738  RFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQ 797
            RFGVRQKE++K +RA+VD+LT+TATPIPRTLNMAMSG+RDLS+IATPPA R+A++TFV  
Sbjct: 737  RFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLSLIATPPAHRMAVRTFVNA 796

Query: 798  SEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQMRERELEK 857
             + + +REA  RE+ RGGQVYFLHN+VE+I++ A +L++L+PEARI +AHGQM ERELE+
Sbjct: 797  WDPATVREAFQRELARGGQVYFLHNEVESIERTARELQELIPEARIGIAHGQMAERELEQ 856

Query: 858  VMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYA 917
            VM DF+ QRFN+LVCTTIIETGID+PTANTII+DRAD  GLAQLHQLRGRVGRSHH+AYA
Sbjct: 857  VMADFHRQRFNVLVCTTIIETGIDIPTANTIIIDRADRFGLAQLHQLRGRVGRSHHRAYA 916

Query: 918  YLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSGQIQSVGF 977
            YL+ P  KA+T DA KRLEA+ASLE+LGAGFTLATHDLEIRGAGELLG+EQSGQIQ +GF
Sbjct: 917  YLIVPDRKAMTADAEKRLEALASLEELGAGFTLATHDLEIRGAGELLGDEQSGQIQEIGF 976

Query: 978  TLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLSMYKQIAS 1037
             LY E+LE+AV ALKSGK P  D     +TEVE+ LPAL+P++Y+PD++TRL++YK+IAS
Sbjct: 977  GLYTELLERAVRALKSGKVPDFDLSSEHETEVELHLPALIPDDYLPDVHTRLTLYKRIAS 1036

Query: 1038 VASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGGYVEFYPN 1097
                + L +L+VE+IDRFG LP+    L AIA LKL A  L +RK++    GG + F   
Sbjct: 1037 ARHDEALRDLQVEMIDRFGLLPEPTKTLFAIAGLKLMATPLGIRKLDFGPNGGRITFRDK 1096

Query: 1098 ADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADML 1144
             +++P+ +++L+Q QP++  +DG  KLK  L L   + RI+   ++L
Sbjct: 1097 PEVDPMAIIRLIQGQPRVYKLDGQDKLKVLLELPGAAERIRTAQEIL 1143