Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  639 bits (1649), Expect = 0.0
 Identities = 371/1028 (36%), Positives = 594/1028 (57%), Gaps = 38/1028 (3%)

Query: 75   WETLPYDNFSP-HQDIISDRISRLYQLPS--LTRGITIVPVSTLLQRQSPRDFLLQHTLI 131
            W  +P       ++D  + R++ L+ L    + +G+ ++ V   L +  P D    H L 
Sbjct: 83   WVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGV-LITVDNFLSKLPPADLFASHELT 141

Query: 132  VKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEI 191
            +  GD  + + +  Q  +  +  V  V  PGE A RG I+D++P G   P R++FF + +
Sbjct: 142  LACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETL 201

Query: 192  DTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQVS 251
            + IR FD  NQRS+ ++DE+ LLP      +A    +   RW++ F      E  Y+ + 
Sbjct: 202  EEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLL 261

Query: 252  KGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVG--ELEKAIDQFLTDVDYRYDQRNI 309
            +G    G       ++E    + ++LP ++  ++ G  EL  A++    + +  +D++  
Sbjct: 262  RGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAE 321

Query: 310  DP---------LRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLP 360
            +          LR   P  +L+  KD   A F+ L  + +  + +++   +++  V   P
Sbjct: 322  EGGARQPRGLVLRDAAPVRQLYEEKDS--AGFEPLV-MGVERTGVDMPERKLHGFVDLFP 378

Query: 361  VLAVEHQNKEPLAA-LRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLA 419
                  +  + L A L +F       ++      GRR+  L+L ++  + P  + D    
Sbjct: 379  APDARDRPWQALVAGLHRFVATHARVLLCFGNERGRRK-FLKLAEQDGITPTLRYD---- 433

Query: 420  CQQTEKYSLVLGSAERGFIYGDNQVALICESDL-LGDRVIQRRRKKDRKNVTNSDAVIRN 478
              +      V+     G       V L  +  L +G+ V+Q +  +  +  + +   +  
Sbjct: 434  -PKGRGLMAVVAPYRAG-------VELAWDGTLVIGEDVLQPKTDRSARVASGAFRGLDK 485

Query: 479  LAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYS 538
               L+PG  +VH D+G+ R++GL+ ++ GG+ +++++LEY  + +LY+PV  L+L+ R+ 
Sbjct: 486  HEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFK 545

Query: 539  GGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATF 598
            G  +    L +LGG AW  ++ KA + +  +AA+L+++YA R+I  G+ +    E Y  F
Sbjct: 546  GADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREF 605

Query: 599  KATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVA 658
            +A+F FEET DQA AI  VL DM +   MDRLVCGDVGFGKTEVA+RAAF A   G+QVA
Sbjct: 606  EASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVA 665

Query: 659  VLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKL 718
            +L PTT+LA+QH++ FR R A  P+ V +LSRF S ++Q ++L   A G VDIL+GTH+L
Sbjct: 666  LLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRL 725

Query: 719  LSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDL 778
            LS ++R  +LGLL++DEE RFGVR KEK+K  R +VD LTLTATPIPRTL ++MSG+R+L
Sbjct: 726  LSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIREL 785

Query: 779  SIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLV 838
            S+I T P  R  + T + + +D+ ++  + REI R GQV+++HN+V+ +++    + KLV
Sbjct: 786  SVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLV 845

Query: 839  PEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGL 898
            P+AR+ +AHGQM ER LE+ M+ F+H   ++LVCT I+E+G+D P ANT+I+D+A   GL
Sbjct: 846  PDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGL 905

Query: 899  AQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIR 958
             QL+QLRGRVGRS  QAYA  + P    ++  A +R+  I  ++ LGAGF +A  DL IR
Sbjct: 906  GQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIR 965

Query: 959  GAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLP 1018
            GAG +LGE QSG +  VG  L++EMLE+AV  LK   +P  + +   +TE+ + +PA +P
Sbjct: 966  GAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKG--DPPRESV---ETELNIGIPAHIP 1020

Query: 1019 EEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRL 1078
            E YI D   RL  YK ++S        ++++E+ DR+G  P      LA+  LK    R+
Sbjct: 1021 EGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRM 1080

Query: 1079 KVRKIEAH 1086
            +V++ + +
Sbjct: 1081 QVQRADIY 1088