Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  739 bits (1907), Expect = 0.0
 Identities = 428/1065 (40%), Positives = 620/1065 (58%), Gaps = 26/1065 (2%)

Query: 69   VALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRG--ITIVPVSTLLQRQSPRDFLL 126
            V  FP W+ LPYD  SP+ +I + R++ L  L     G  + +  +S + QR   R  L 
Sbjct: 61   VLRFPGWDCLPYDRSSPNPEISATRMATLAALAHGVPGPFVLLTTLSAVTQRVPARATLA 120

Query: 127  QHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDF 186
            + +   + G       LR  L    +     V  PG+YA RG I+D+FP G S P R+D 
Sbjct: 121  EASFSAQVGGRIDEAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDL 180

Query: 187  FDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESV 246
            F D +D  R FD   QR+  ++D I L P  E     AAI  FR  +R  F A    + +
Sbjct: 181  FGDVLDGARRFDAATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPL 240

Query: 247  YSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLV-------VGELEKAIDQFLTD 299
            Y  VS G   AG+E+W P F +  ETL DY+P  S +L        +   E   DQ+ T 
Sbjct: 241  YEAVSAGRKHAGMEHWLPFFHDRLETLLDYVPEASLILDDQFEAMHLSRWEGIKDQYETR 300

Query: 300  VDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPL 359
                  +  +  +    PP  L++   +  A   T   +QL+  P     G  +A  +  
Sbjct: 301  RHALAQKGQMGTVYKPAPPETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIG 360

Query: 360  PVLAVEHQNKEP----LAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQ-N 414
               A E Q++        A     ++ T +++ +  SEG RE L  LL+   L   ++  
Sbjct: 361  RNFAPERQSQATGLFEALATHITEKRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIA 420

Query: 415  DFSLACQQTEKYSLVLGSAERGFIYGDNQ---VALICESDLLGDRVIQRRRKKDRKNVTN 471
              S   + T    L++ + + GF   D++   + +I E D+LGDR+I+  ++K R     
Sbjct: 421  RLSDIPEGTGGVHLLVWALDEGFEGPDHRSTRLTVISEQDVLGDRLIRTTKRKRR----- 475

Query: 472  SDAVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSL 531
            ++  ++    L  G  VVH+DHG+G + GL+T+ A G   E ++LEY    +LY+PV ++
Sbjct: 476  AENFLQEATSLSAGDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENI 535

Query: 532  NLISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLD 591
             L+SR+    +E   L KLGG AW   + K  E++R++A +L+ + A+R ++        
Sbjct: 536  ELLSRFG---QEIGMLDKLGGGAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPP 592

Query: 592  REQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVAT 651
             + +  F A FP+ ETDDQ  AI  V+ D+     MDRL+CGDVGFGKTEVAMRAAF+A 
Sbjct: 593  PDMWEAFSARFPYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAA 652

Query: 652  DNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDI 711
             +G QVAV+ PTTLLA+QH+++F DRF   P+ V  LSRF  AK      + +A G VDI
Sbjct: 653  LSGVQVAVIAPTTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDI 712

Query: 712  LVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMA 771
            +VGTH LL+  +RF +LGLLI+DEE RFGV  KE++K +R+DV +LTLTATPIPRTL ++
Sbjct: 713  VVGTHALLAKGVRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLS 772

Query: 772  MSGMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVA 831
            +SG+RDLSII TPP  RL+I+T+V + +   +REA+LRE  RGGQ +F+  +++ I ++ 
Sbjct: 773  LSGVRDLSIIGTPPVDRLSIRTYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIE 832

Query: 832  ADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMD 891
            A L   VPE    VAHGQM   EL+  MN FY  ++++L+ TTI+E+G+D+PTANT+I+ 
Sbjct: 833  AFLRDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIH 892

Query: 892  RADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLA 951
            RAD  GL+QL+Q+RGRVGR+  +AYAYL T P   +T  A KRL  + SL+ LGAGFTLA
Sbjct: 893  RADMFGLSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLA 952

Query: 952  THDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGK-EPALDDLLREQTEVE 1010
            + DL+IRGAG LLGE QSGQ + VGF LY  MLE+A+  +KSG  E   DD  +   ++ 
Sbjct: 953  SQDLDIRGAGNLLGEAQSGQFREVGFELYQSMLEEAIGKIKSGSLEGLTDDDGQWAPQIN 1012

Query: 1011 MRLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAE 1070
            + +P L+PE Y+PD++ RL +Y++++ + +K EL     ELIDRFGKLP     LL I  
Sbjct: 1013 LGVPVLIPEAYVPDLDVRLGLYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVR 1072

Query: 1071 LKLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKL 1115
            +K    +  + K++   +G  V+F+ +   NP  LVK +  Q  L
Sbjct: 1073 IKAMCKKAGIAKLDGGPKGATVQFHNDKFANPAGLVKFINDQKGL 1117