Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  248 bits (632), Expect = 2e-69
 Identities = 160/424 (37%), Positives = 229/424 (54%), Gaps = 20/424 (4%)

Query: 559 RRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVL 618
           RR A +++      L    A R   PG +   D  +     A  P+  T  Q   I+ + 
Sbjct: 221 RRLAYDELLAHQTTLALARAHRRRAPGRRLTGDGRRVGPVLAALPYTPTGAQQRVISEIT 280

Query: 619 SDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRF 678
            D+     M+RL+ GDVG GKT VA+ A  +A + G Q  ++ PT +LA+QH        
Sbjct: 281 EDLAAPHRMNRLLQGDVGAGKTLVALVAMLLAVEAGTQAVMMAPTEILARQHLAALLPLA 340

Query: 679 ANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHR 738
               + VEVL+     +E+   L  +A G + ILVGTH +   ++ F DLGL ++DE+HR
Sbjct: 341 EAAGVVVEVLTGRDKGRERAAKLAALAAGDIHILVGTHAVFQDDVAFHDLGLAVIDEQHR 400

Query: 739 FGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFV--- 795
           FGVR++ ++ A  A VD+L +TATPIPR+L +   G  D+SI+   P  R  +KT +   
Sbjct: 401 FGVRERMRLGAKGAAVDVLVMTATPIPRSLALVTYGDMDVSILDEKPPGRTPVKTALVSA 460

Query: 796 -RQSEDSVIREAVLREIMRGGQVYF---LHNQVETIDKVAAD-----LEKLVPEARITVA 846
            R  E     +A L E   G QVY+   L  + ET+   AA+     L     E R+ + 
Sbjct: 461 DRLDELLAHLDAALSE---GRQVYWVCPLVEESETLALTAAEERFKHLRARFGEGRVGLV 517

Query: 847 HGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRG 906
           HGQM   E +  M DF      LLV TT+IE G+DVP A+ ++++ A+  GLAQLHQLRG
Sbjct: 518 HGQMPVAEKDAAMADFVAGETRLLVATTVIEVGVDVPNASIMVIEGAEHFGLAQLHQLRG 577

Query: 907 RVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGE 966
           RVGR    +   LL  PP  + + A KRL+ +   ED   GF ++  D+E+RGAG+L+G 
Sbjct: 578 RVGRGSTASSCLLLYAPP--LGETATKRLKLMRETED---GFRISEADMEMRGAGDLIGT 632

Query: 967 EQSG 970
            QSG
Sbjct: 633 AQSG 636