Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

 Score =  748 bits (1931), Expect = 0.0
 Identities = 436/1116 (39%), Positives = 645/1116 (57%), Gaps = 35/1116 (3%)

Query: 12   AQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHS-EVA 70
            A+ AG     G   G   AL +A++A A    T     D   A   +  ++ F+   E  
Sbjct: 9    AKAAGGLTLAGAPEGFD-ALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAV 67

Query: 71   LFPDWETLPYDNFSPHQDIISDRISRLYQLP----SLTRGITIVPVSTLLQRQSPRDFLL 126
            LFP W+ LPYD   P   + + R++ L +L          I ++    LLQR   ++ LL
Sbjct: 68   LFPSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLL 127

Query: 127  QHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDF 186
            + +   K G +  +  L      + Y     V   GE+A RG ++D++P  + +P R+D 
Sbjct: 128  RASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDL 187

Query: 187  FDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESV 246
            F D +++IR FDP+ QRS  ++ EI LLP  E    A  I  FR  +   F A  + +++
Sbjct: 188  FGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPGD-DAL 246

Query: 247  YSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQ 306
            Y+ VS+G   AG+E+W PLF+E   TLFDYLPA + + V  +  +A D+ L  +   YD 
Sbjct: 247  YAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDA 306

Query: 307  R----NIDPLRPLLPPN-----ELWLRK--DELFAHFKTLPQVQLTSSPIELRAGRMNAQ 355
            R         RPL P       E W R+  D     F       L    +  + GR+ A 
Sbjct: 307  RASADRKSAYRPLAPEALYLTAEEWERELSDRTHRRFTPFQPQGLDVIDLGAKLGRVFAA 366

Query: 356  VQPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQND 415
             +    + +     +   AL    +    +++F+  SEG  E L  +L    L+      
Sbjct: 367  ERAQDSVNLFEATADHAKALAAQGK----RVLFASWSEGSSERLGTMLADHGLKKIPYAG 422

Query: 416  FSLACQQTEKY--SLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSD 473
            +  A +  +      V+   + GF    + +A+I E+D+LGDR+ + R+K+   N     
Sbjct: 423  YWQAAKANDPKVPQRVVLPLDHGF--ETDSLAVISETDILGDRLARPRKKRRAANF---- 476

Query: 474  AVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNL 533
              +   + L PG  VVHIDHGIGRY GL+TL+  G   + + L Y  EAKLY+PV +++L
Sbjct: 477  --LAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDL 534

Query: 534  ISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDRE 593
            ++RY     E  QL KLGG AW   + KA E++R +A  L+ + A R++K   +      
Sbjct: 535  LTRYGAADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSG 594

Query: 594  QYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDN 653
             +  F A FP+EETDDQ  AI+ VL D+   K MDRL+CGDVGFGKTEVA+RAAFV   +
Sbjct: 595  VFDEFCARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMS 654

Query: 654  GKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILV 713
            GKQVA++ PTTLLA+QH++ F+DRF   P++V  LSR  + KE  +  + +A+G+ +I+V
Sbjct: 655  GKQVAIVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVV 714

Query: 714  GTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMS 773
            GTH +LS ++ F DLGL+IVDEE  FGV+ KEK+K +RADV +LTLTATPIPRTL MA+S
Sbjct: 715  GTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALS 774

Query: 774  GMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAAD 833
            G+R++SIIATPP  RLA++T++   +   +REA+LRE  RGGQ Y++  +++ ++ +   
Sbjct: 775  GIREMSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKF 834

Query: 834  LEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRA 893
            L   VPE +  V HGQM   +LE VM  FY  ++++L+ TTI+E+G+D+P+ANT+I+ RA
Sbjct: 835  LRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRA 894

Query: 894  DSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATH 953
            D  GLAQL+Q+RGRVGRS  +AYAYL TP  K++T  A KRL+ + SL+ LGAGF LA+H
Sbjct: 895  DMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASH 954

Query: 954  DLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEAL--KSGKEPALDDLLREQTEVEM 1011
            DL+ RG G LLG+EQSG I+ +G  LY +MLE AV  L  + G+E  L+D      ++  
Sbjct: 955  DLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLED-RGWSPQINT 1013

Query: 1012 RLPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAEL 1071
                ++P++Y+PD+N RLS+Y++++      +   L  E+IDRFG LP    +LL +  +
Sbjct: 1014 GAAVMIPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAI 1073

Query: 1072 KLNAMRLKVRKIEAHERGGYVEFYPNADINPVFLVK 1107
            K       V KI+   +G    F  ++  NP+ L++
Sbjct: 1074 KGLCREANVAKIDVGPKGAVASFRGDSYANPLGLMQ 1109