Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 698 a.a., ATP-dependent DNA helicase recG (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  248 bits (632), Expect = 2e-69
 Identities = 147/400 (36%), Positives = 231/400 (57%), Gaps = 22/400 (5%)

Query: 585 GFKFHLDREQYATFKA-TFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVA 643
           G+ F    + + TF +   PF+ T  Q   +  + +D+   + M+RL+ GDVG GKT VA
Sbjct: 247 GYIFERVGDVFNTFYSQNLPFQLTGAQKRVLKEIRNDVGSGRQMNRLLQGDVGSGKTLVA 306

Query: 644 MRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQD 703
           + +  +A DNG Q  ++ PT +LA QH+E  ++    + IRVE+L+     K+++ IL  
Sbjct: 307 LMSMLLALDNGFQACMMAPTEILANQHYETIKELLFGMDIRVELLTGSIKGKKREAILTG 366

Query: 704 VADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRAD-VDILTLTAT 762
           +  G V IL+GTH ++   + F+ LGL+++DE+HRFGV Q+ ++         +L +TAT
Sbjct: 367 LLTGDVKILIGTHAVIEDTVNFSSLGLVVIDEQHRFGVAQRARLWTKNIQPPHVLVMTAT 426

Query: 763 PIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVR--QSEDSVIREAVLREIMRGGQVYFL 820
           PIPRTL M + G  D+S+I   P  R  I T  +     +S+ R AV ++I  G QVY +
Sbjct: 427 PIPRTLAMTLYGDLDVSVIDELPPGRKPITTIHQFDNRRESMYR-AVRKQIEEGRQVYIV 485

Query: 821 HNQVETIDKVAADLEKL----------VPEARITVAHGQMRERELEKVMNDFYHQRFNLL 870
           +  ++  +K+  DL+ L           P   +   HG+M+  E ++ M  F   +  ++
Sbjct: 486 YPLIKESEKI--DLKNLEEGYQHILEEFPGCTVAKVHGKMKSAEKDEQMQLFISGQAQIM 543

Query: 871 VCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKD 930
           V TT+IE G++VP A+ +I++ A+  GL+QLHQLRGRVGR   Q+Y  L+T     +T+D
Sbjct: 544 VATTVIEVGVNVPNASVMIIENAERFGLSQLHQLRGRVGRGAEQSYCILVT--NYKLTED 601

Query: 931 AVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
             KRLE +    D   GF +A  DL++RG G+L G +QSG
Sbjct: 602 TRKRLEIMVRTND---GFEIAEADLKLRGPGDLEGTQQSG 638