Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1127 a.a., transcription-repair coupling factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  532 bits (1370), Expect = e-155
 Identities = 279/687 (40%), Positives = 431/687 (62%), Gaps = 13/687 (1%)

Query: 425  KYSLVLGSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKP 484
            +++ V+ +   GF+     + +  +  L  DR  +   K D+         ++ L +  P
Sbjct: 379  QFTPVVRTIHEGFVDHTLHLCIFTDHQLF-DRFHKYNLKSDKARSGKVALSLKELNQFTP 437

Query: 485  GQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEA 544
            G  VVH DHGIGR+ GL  +  G    E + L +QNE  ++V + SL+ +S+Y G   EA
Sbjct: 438  GDYVVHTDHGIGRFSGLVRIPNGDTTQEVLKLVFQNEDVVFVSIHSLHKVSKYKGKDGEA 497

Query: 545  AQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPF 604
             +L+KLG  AW K + +   K++D+A +L+ +Y++R  + GF +  D       +A+F +
Sbjct: 498  PRLNKLGTGAWEKLKDRTKAKIKDIARDLIKLYSQRRQEKGFSYSPDSFLQRELEASFIY 557

Query: 605  EETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTT 664
            E+T DQ+ A   V +DM   + MDRLVCGDVGFGKTEVA+RAAF A  + KQVAVLVPTT
Sbjct: 558  EDTPDQSKATMEVKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTT 617

Query: 665  LLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIR 724
            +LA QHF+ FR+R   LP RVE LSR ++A + K +L+ + +G+V IL+GTH++L  +++
Sbjct: 618  VLAYQHFQTFRERLKGLPCRVEYLSRARTAAQSKAVLKGLKEGEVSILIGTHRILGKDVQ 677

Query: 725  FADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATP 784
            F DLGLLI+DEE +FGV  KEK++ ++ +VD LT+TATPIPRTL  ++ G RDLS+I+TP
Sbjct: 678  FKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSVISTP 737

Query: 785  PARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARIT 844
            P  R  I+T V    + VI +A+  E+ R GQV+F++N++  + ++   +E+ +P+ R+ 
Sbjct: 738  PPNRYPIQTEVHTFNEEVITDAINFEMSRNGQVFFVNNRIANLPELKVMIERHIPDCRVA 797

Query: 845  VAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQL 904
            + HGQM   +LE+++ DF +  +++L+ TTIIE+GID+P ANTII+++A + GL+ LHQ+
Sbjct: 798  IGHGQMEPTQLEQIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQM 857

Query: 905  RGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELL 964
            RGRVGRS+ +A+ YLL PP  ++T +  +RL+AI +  DLG+G  +A  DL+IRGAG LL
Sbjct: 858  RGRVGRSNKKAFCYLLAPPLSSLTAEGKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNLL 917

Query: 965  GEEQSGQIQSVGFTLYMEMLEQAVEALKSGK--EPALDDLLRE----------QTEVEMR 1012
            G EQSG I  +G+  Y ++L +AV  L++ +  E   D++  E          + ++E  
Sbjct: 918  GAEQSGFIADLGYETYQKILAEAVHELRNDEFAELYADEIKGEGQISGEEFVDECQIESD 977

Query: 1013 LPALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELK 1072
            L  LLP  Y+   + R+ +Y+++  +    ++   +  L DRFG +P     LL I  L+
Sbjct: 978  LELLLPATYVTGSSERMLLYRELDGLTLDKDVDAFRFRLEDRFGPVPPETQELLRIVPLR 1037

Query: 1073 LNAMRLKVRKIEAHERGGYVEFYPNAD 1099
              A RL V K+        + F  NAD
Sbjct: 1038 RLAARLGVEKVFLKGGRMTLFFVSNAD 1064



 Score = 76.6 bits (187), Expect = 1e-17
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 6/198 (3%)

Query: 22  GNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHEVEQFSHSE-VALFPDW--ETL 78
           G L  +S +L  + L        +  + D + A    H++ Q   +E V  FP     ++
Sbjct: 34  GGLCASSASLFSSVLVKQDVCPFVFVLGDLEEAGYFYHDLTQVLGTEKVFFFPSSFRRSI 93

Query: 79  PYDNFSPHQDIISDRISRLYQLPSLTRGITIVPV-STLLQRQSPRDFLLQHTLIVKRGDH 137
            Y       +I+   +  L +L     G+ IV     L ++   R  L   TL +  G+ 
Sbjct: 94  KYGQKDAANEILRTEV--LSRLQKGEEGLCIVTYPDALAEKVVSRKELSDKTLKLNVGEK 151

Query: 138 FSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDEIDTIRTF 197
                +   L +  + +VD V+ PG+YA RGSI+D+F   S  P+RIDFF DE+++IRTF
Sbjct: 152 LDTTFITDVLHSYGFEYVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVESIRTF 211

Query: 198 DPDNQRSIAEMDEIRLLP 215
           + ++Q S    + + ++P
Sbjct: 212 EVESQLSRERKEGVAIVP 229