Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., helicase from Burkholderia phytofirmans PsJN

 Score = 1078 bits (2787), Expect = 0.0
 Identities = 570/1135 (50%), Positives = 766/1135 (67%), Gaps = 13/1135 (1%)

Query: 15   AGDKKAIGNLHGASLALAIAELANAHTSHT-LLAV--PDPQTALKLLHEVEQFS-HSEVA 70
            AG + A    HG+S AL IA    A+     LLAV       A +L  E+  F+  + V 
Sbjct: 19   AGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVDAQRLAQEIGFFAPEARVR 78

Query: 71   LFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQRQSPRDFLLQHTL 130
            L PDWETLPYD FSPHQD++S+R++ L+ L      I +VP +T L R  P  FL  +T 
Sbjct: 79   LLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTF 138

Query: 131  IVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMGSSDPFRIDFFDDE 190
               +G+     +++ QL  + Y HV QV  PGEY  RGS+LDL+PMGS  P+RID FDD+
Sbjct: 139  SFAQGERLDEARIKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLYPMGSPLPYRIDLFDDQ 198

Query: 191  IDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRFEARREPESVYSQV 250
            +D+IR FDPD QRS+  + ++RLLP  EFP   AA   FR+RWR+ FE      ++Y  +
Sbjct: 199  VDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAAIYKDI 258

Query: 251  SKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQFLTDVDYRYDQRNID 310
              G   AGIEY+ PLFFE + TLF YLP  +QL  VG+L+ AI +F  D   RY+  + D
Sbjct: 259  GNGVPSAGIEYYLPLFFEDTATLFHYLPEGAQLAFVGDLDAAIRRFTNDTKQRYNFLSHD 318

Query: 311  PLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQVQPLPVLAVEHQNKE 370
              RP+L P  L+L  ++ F   K   ++ L ++     AG       PLP LA++   ++
Sbjct: 319  RDRPILEPQRLFLSDEDFFTLAKPFARLSLPAN-----AG--GGWSTPLPNLAIDRHAED 371

Query: 371  PLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDFSLACQQTEKYSLVL 430
            P+A LR + +    +++F+ ES GRRE LL+LL    LRP S + F       E++SL +
Sbjct: 372  PVAGLRAYLDTTPNRVLFAAESAGRRETLLQLLADNHLRPVSSDSFQDWLTSDERFSLGV 431

Query: 431  GSAERGFIYGDNQVALICESDLLGDRVIQRRRKKDRKNVTNSDAVIRNLAELKPGQPVVH 490
                 GF    + +A+I E++L G  + +R  ++ ++  +N D+++R+L+ELK G PVVH
Sbjct: 432  APLANGFAVPVDGIAIITETELYGP-LARRAGRRRQEQASNVDSMVRDLSELKVGDPVVH 490

Query: 491  IDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNLISRYSGGAEEAAQLHKL 550
              HGIGRY+GL T++ G   +E++ LEY  ++KLYVPV+ L++ISRYSG   E+A LH L
Sbjct: 491  SQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGADPESAPLHSL 550

Query: 551  GGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQ 610
            G   W KA+RKAA+++RD AAELL++YA+R ++ G  F L+ + Y  F  +F FEET DQ
Sbjct: 551  GSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGHAFALEPKDYVKFAESFGFEETPDQ 610

Query: 611  AMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQH 670
            A AI AV+ DM   K MDRLVCGDVGFGKTEVA+RAAF+A   GKQVA+L PTTLLA+QH
Sbjct: 611  AAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQH 670

Query: 671  FENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGL 730
             + F DRF++ P+R+  LSRFKS KE    +Q + +G VDI++GTHKLLSS+++F  LGL
Sbjct: 671  TQTFSDRFSDWPVRIAELSRFKSTKEVSAAIQQINEGTVDIVIGTHKLLSSDVQFKRLGL 730

Query: 731  LIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 790
            +I+DEEHRFGVRQKE +KA+RA+VD+LTLTATPIPRTL MA+ G+RD S+IAT P +RLA
Sbjct: 731  VIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLA 790

Query: 791  IKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAADLEKLVPEARITVAHGQM 850
            IKTFVR+ EDSVIREA+LRE+ RGGQVYFLHN+VETI+     LE LVPEARI VAHGQM
Sbjct: 791  IKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVETIENRRQMLEALVPEARIAVAHGQM 850

Query: 851  RERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGR 910
             ERELE+VM DF  QR N+L+CTTIIETGIDVP+ANTI++ RAD  GLAQLHQLRGRVGR
Sbjct: 851  HERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIHRADKFGLAQLHQLRGRVGR 910

Query: 911  SHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
            SHHQAY+YLL   P+ +TK A +RLEAI  +E+LG+GF LA HDLEIRG GE+LG++QSG
Sbjct: 911  SHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSG 970

Query: 971  QIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRLPALLPEEYIPDINTRLS 1030
            +I  +GF LY +ML  AV+ALK GKEP L   L   TE+ +   A+LP +Y  D+  RLS
Sbjct: 971  EIHEIGFQLYTDMLNDAVKALKEGKEPDLTAPLAATTEINLHASAILPADYCGDVQERLS 1030

Query: 1031 MYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKLNAMRLKVRKIEAHERGG 1090
            +YK++A+    D +  ++ ELIDRFGKLP  A  L+    L+L A  L + KI+A E   
Sbjct: 1031 LYKRLANCEHNDSIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGISKIDAGEAVI 1090

Query: 1091 YVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVERSARIQFVADMLK 1145
             ++F PN  I+ + +++++Q   K + + G  KL+      + + R+  V + L+
Sbjct: 1091 GLQFIPNPPIDAMRIIEMVQKH-KHIKLAGQDKLRIETRSPDLAVRVATVKETLR 1144