Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., ATP-dependent DNA helicase RecG from Burkholderia phytofirmans PsJN

 Score =  219 bits (559), Expect = 5e-61
 Identities = 144/390 (36%), Positives = 200/390 (51%), Gaps = 31/390 (7%)

Query: 603 PFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVP 662
           PF  T  Q      +  D+ Q   M RL+ GDVG GKT VA  AA  A D G Q A++ P
Sbjct: 385 PFSLTAAQERVGGEIALDLTQPHPMQRLLQGDVGSGKTIVAALAAAQAIDAGYQAALMAP 444

Query: 663 TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSE 722
           T +LA+QH    R     L + V  L+     +E++  ++  A G   +++GTH ++   
Sbjct: 445 TEILAEQHARKLRGWLEPLGVSVAWLAGSLKTREKRAAIEAAALGTAQLVIGTHAIIQDA 504

Query: 723 IRFADLGLLIVDEEHRFGVRQKEKVKAMRADV---------DILTLTATPIPRTLNMAMS 773
           + FA LGL+IVDE+HRFGV Q+  ++A   +            L ++ATPIPRTL M   
Sbjct: 505 VEFARLGLVIVDEQHRFGVAQRLALRAKAQNAADGARDFQPHQLMMSATPIPRTLAMTYY 564

Query: 774 GMRDLSII-ATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYF------------L 820
              D+S I   PP R   +   V  +    +   V    + G QVY+            L
Sbjct: 565 ADLDVSTIDELPPGRTPILTKLVSDARREEVIGRVREAALTGRQVYWVCPLIEESETLQL 624

Query: 821 HNQVETIDKVAADLEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGI 880
              VET + + A L    PE ++ + HG++   E   VM+ F      LLV TT+IE G+
Sbjct: 625 QTAVETYETLVAAL----PELKVGLVHGRLAPAEKAAVMDAFTRNEVQLLVATTVIEVGV 680

Query: 881 DVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIAS 940
           DVP A+ ++++ A+  GLAQLHQLRGRVGR    +   LL   P ++T  A  RL+ +  
Sbjct: 681 DVPNASLMVIEHAERFGLAQLHQLRGRVGRGSAASVCVLLYTGPLSMTARA--RLQTMRE 738

Query: 941 LEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
             D   GF +A  DLEIRG GE LG  QSG
Sbjct: 739 TTD---GFEIARRDLEIRGPGEFLGARQSG 765