Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella sp. ANA-3

 Score = 1297 bits (3357), Expect = 0.0
 Identities = 665/1159 (57%), Positives = 861/1159 (74%), Gaps = 9/1159 (0%)

Query: 1    MTTHSLLSLFSAQGAGDKKAIGNLHGASLALAIAELANAHTSHTLLAVPDPQTALKLLHE 60
            MT  S L+    +     + +  L G   A+ +A L   H   TL+   D  TAL +  E
Sbjct: 1    MTQISALTPPVVKNGTQMQTLSCLAGVGQAVTLASLVRQHKGTTLIVTSDTPTALSIELE 60

Query: 61   VEQF---SHSEVALFPDWETLPYDNFSPHQDIISDRISRLYQLPSLTRGITIVPVSTLLQ 117
            +      S  +V LFPD ETLPYD+FSPHQD+IS R+  L Q+      + IVPV+TL+ 
Sbjct: 61   LNYLLAKSVIKVRLFPDRETLPYDSFSPHQDLISQRLETLSQITQAEHSVVIVPVTTLMM 120

Query: 118  RQSPRDFLLQHTLIVKRGDHFSLDKLRLQLENSSYRHVDQVFGPGEYASRGSILDLFPMG 177
            R  P+ +L  +  ++K+GD + L  +R QL ++ Y  V+QV+  GE+A RGSILD+FP G
Sbjct: 121  RLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180

Query: 178  SSDPFRIDFFDDEIDTIRTFDPDNQRSIAEMDEIRLLPAHEFPTTAAAIEEFRNRWRQRF 237
             + P RI+ FDDE++TIR FDP+ QRS   +D +RLLPA EFPT ++AIE FR R+R+RF
Sbjct: 181  VNMPLRIELFDDEVETIRHFDPETQRSSTPVDAVRLLPAKEFPTDSSAIEGFRQRYRRRF 240

Query: 238  EAR-REPESVYSQVSKGTWPAGIEYWQPLFFEHSETLFDYLPANSQLLVVGELEKAIDQF 296
            E   +EPESVY  VS+   PAGIE + PLFF+   TLFDYLP ++QL+ +G++EK+    
Sbjct: 241  EVIVKEPESVYQLVSRNLMPAGIENYLPLFFDEVATLFDYLPKDTQLVTLGDIEKSARAH 300

Query: 297  LTDVDYRYDQRNIDPLRPLLPPNELWLRKDELFAHFKTLPQVQLTSSPIELRAGRMNAQV 356
            L +V+ RY+ R +DPLRPLL P EL+L  +ELFA FK LP+ Q  +   +  AG +    
Sbjct: 301  LQEVETRYEDRRVDPLRPLLAPKELYLLIEELFAAFKPLPRYQFIAPQPDAVAGAVQIDA 360

Query: 357  QPLPVLAVEHQNKEPLAALRQFSEQFTGKIIFSVESEGRREALLELLQRIKLRPQSQNDF 416
              LP ++  H+ K+PL AL+ ++E+   +++FS ESEGRREALLELL +I+L+P   + F
Sbjct: 361  SVLPEVSANHKLKQPLIALQDYAER-APRMLFSAESEGRREALLELLSKIQLKPVLFSHF 419

Query: 417  SLACQQTEKYSLVLGSAERGFIYG---DNQVALICESDLLGDRVIQRRRKKDRKNVTNSD 473
                Q   K  L++    RG + G      V++ICE++L G R+ Q+RR++ ++ ++N D
Sbjct: 420  DEFIQSDAKLGLIVSPLSRGCLLGLGKQTAVSIICETELFGHRISQQRRREKQRQISN-D 478

Query: 474  AVIRNLAELKPGQPVVHIDHGIGRYLGLQTLEAGGMVSEYVMLEYQNEAKLYVPVSSLNL 533
             +I+NLAELK GQP+VH++HG+  Y GL TL+ GG+V+EY+ LEY    KLYVPVS+L++
Sbjct: 479  TLIKNLAELKVGQPIVHLEHGVALYQGLVTLDTGGLVAEYLQLEYSGGDKLYVPVSNLHM 538

Query: 534  ISRYSGGAEEAAQLHKLGGEAWVKARRKAAEKVRDVAAELLDVYAKREIKPGFKFHLDRE 593
            ISRYS GA+  A L+KLG + W KA+ KA EK+RDVAAELLDVYA+R+ +PG    ++ E
Sbjct: 539  ISRYSVGADGEAHLNKLGNDTWAKAKNKAIEKIRDVAAELLDVYARRQARPGESCDINDE 598

Query: 594  QYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDN 653
            +YA F   FPFEET DQ  AI+AVL+DM    AMDRLVCGDVGFGKTEVAMRAAFVA + 
Sbjct: 599  EYAQFAQGFPFEETVDQESAIHAVLADMQSPVAMDRLVCGDVGFGKTEVAMRAAFVAVNA 658

Query: 654  GKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKQILQDVADGKVDILV 713
            GKQV VLVPTTLLAQQH+ENF+DRFA+ P+ +EV+SRF++AKEQ Q+L+ + +GKVDI++
Sbjct: 659  GKQVVVLVPTTLLAQQHYENFKDRFADWPVVIEVMSRFRTAKEQTQVLKLLEEGKVDIVI 718

Query: 714  GTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMS 773
            GTHKLL SE +F +LGLLI+DEEHRFGVRQKEK+KA+RA+VDILTLTATPIPRTLNMAMS
Sbjct: 719  GTHKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMS 778

Query: 774  GMRDLSIIATPPARRLAIKTFVRQSEDSVIREAVLREIMRGGQVYFLHNQVETIDKVAAD 833
            GMRDLSIIATPPA+RLA+KTFVR+S+ + +REA+LREI+RGGQVY+LHN VETI+K A D
Sbjct: 779  GMRDLSIIATPPAKRLAVKTFVRESDPATVREAILREILRGGQVYYLHNNVETIEKCAQD 838

Query: 834  LEKLVPEARITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRA 893
            +  L+PEAR+ VAHGQMRER+LE+VM+DFYHQRFN+LVCTTIIETGIDVP+ANTII++RA
Sbjct: 839  ISTLLPEARVVVAHGQMRERDLERVMSDFYHQRFNVLVCTTIIETGIDVPSANTIIIERA 898

Query: 894  DSLGLAQLHQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATH 953
            D+ GLAQLHQLRGRVGRSHHQAYAYL+TP PK +T DA KRLEAI +LEDLGAGF LAT 
Sbjct: 899  DTFGLAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQ 958

Query: 954  DLEIRGAGELLGEEQSGQIQSVGFTLYMEMLEQAVEALKSGKEPALDDLLREQTEVEMRL 1013
            DLEIRGAGELLG+EQSG I  +GF+LYMEMLE AV+ALK GKEP+L  +L +Q E+E+R+
Sbjct: 959  DLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEMELRI 1018

Query: 1014 PALLPEEYIPDINTRLSMYKQIASVASKDELAELKVELIDRFGKLPDAALNLLAIAELKL 1073
            PALLPE+Y+ D+N RLS+YK+IAS  S++ L ELKVELIDRFG LP+A  NL+ +   K 
Sbjct: 1019 PALLPEDYVGDVNIRLSLYKRIASCDSEETLDELKVELIDRFGLLPEATKNLMEMTLYKH 1078

Query: 1074 NAMRLKVRKIEAHERGGYVEFYPNADINPVFLVKLLQSQPKLLAMDGPTKLKFTLPLVER 1133
             A RL   KIE H +GG +EF  +  I+P F++ LLQSQP++  MDGP KLKF L     
Sbjct: 1079 QATRLGATKIEVHAKGGSIEFSDDHVIDPGFIIGLLQSQPQIYRMDGPNKLKFILNAETA 1138

Query: 1134 SARIQFVADMLKNFQQNVL 1152
              R+  V  +L+   Q+ L
Sbjct: 1139 KDRLALVKLLLEQLSQHRL 1157