Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 696 a.a., ATP-dependent DNA helicase RecG (RefSeq) from Shewanella sp. ANA-3

 Score =  243 bits (620), Expect = 4e-68
 Identities = 151/412 (36%), Positives = 221/412 (53%), Gaps = 19/412 (4%)

Query: 573 LLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVC 632
           +L +  +  +      H   +    F A+ PF+ T  Q   +  +  D+ Q   M RLV 
Sbjct: 239 MLRLRQRSNLDAAVTMHASGQLLNPFLASLPFKPTGAQQRVVAEIGKDLAQPHPMMRLVQ 298

Query: 633 GDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPIRVEVLSRFK 692
           GDVG GKT VA  AA  A +NG QVA++ PT LLA+QH  NF   F  L ++V  L+   
Sbjct: 299 GDVGSGKTLVAALAALQAIENGYQVAMMAPTELLAEQHATNFAAWFEPLGLKVGWLAGKL 358

Query: 693 SAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQKEKVKAMRA 752
             K + Q L+D+  G   I++GTH +   ++ F  L L+I+DE+HRFGV Q+  ++    
Sbjct: 359 KGKARAQSLEDIESGAAQIVIGTHAIFQQQVTFNKLALIIIDEQHRFGVHQRMGLREKGI 418

Query: 753 DVDI----LTLTATPIPRTLNMAMSGMRDLSII-ATPPARRLAIKTFVRQSEDSVIREAV 807
           +       L +TATPIPRTL M      D SII   PP R       +  S  + + E V
Sbjct: 419 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRRNEVLERV 478

Query: 808 LREIMRG-GQVYFLHNQVE--------TIDKVAADLEKLVPEARITVAHGQMRERELEKV 858
              ++    Q Y++   +E          +  A +L + +PE  I + HG+M+  E +K+
Sbjct: 479 RNSVVTDKRQAYWVCTLIEESEVLECQAAEDTAEELRQALPELSIGLVHGRMKSAEKQKI 538

Query: 859 MNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQLHQLRGRVGRSHHQAYAY 918
           M DF     +LLV TT+IE G+DVP ++ +I++  + LGLAQLHQLRGRVGR    ++  
Sbjct: 539 MADFKAGSIHLLVATTVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGAVASHCV 598

Query: 919 LLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAGELLGEEQSG 970
           LL   P  +++ A +RL  +    D   GF +A  DLEIRG GE+LG +Q+G
Sbjct: 599 LLYKAP--LSQTASQRLNVLRQSND---GFVIAQKDLEIRGPGEVLGTKQTG 645