Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  145 bits (367), Expect = 8e-39
 Identities = 126/454 (27%), Positives = 216/454 (47%), Gaps = 46/454 (10%)

Query: 565 KVRDVAAELLDVYAKREIKP-GFK---FHLDREQYATFKATFPFEETDDQAMAINAVLSD 620
           +V  +AA L+   AK      G K    H + E       + PF+ T++Q  A  ++++ 
Sbjct: 226 QVSKLAAVLIGAEAKELASQWGVKRVPLHFESEAIDNRIKSLPFQMTEEQKSAAFSMVTQ 285

Query: 621 MCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFAN 680
           M  A +   ++ GDVG GK+ V    A    D G +VA+++PT+ LA+Q    F + + +
Sbjct: 286 MTSAVSQHMMLIGDVGTGKSCVIGTCAASVVDAGGRVAIMLPTSNLARQLHREFSEYYPD 345

Query: 681 LPIRVEVLSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFG 740
           +   + +         + +I+++++  ++  L+GT  +L  +  F    L +VDE+H+F 
Sbjct: 346 ISPTLVI---------EGEIIEEISQCRM--LIGTTAILHKQWPFT-FDLTVVDEQHKFS 393

Query: 741 VRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDL--------------SIIATPPA 786
           V Q+E   A  A   +L  TATP+PRT  +   G+  +               ++     
Sbjct: 394 VEQRELFCADGAH--LLESTATPVPRTAALLKHGVLKVYELKHCFVDKRIESRLLEHYAG 451

Query: 787 RRLAIKTFVR-QSEDSVIREAVLREIMRGGQVYFLHNQVETIDK----VAADLEKLVPEA 841
           R LAI+     QS   ++    L++  +      + N  ET +K    + ++   L   +
Sbjct: 452 RDLAIRALATLQSGQKLLIVCALKDESKCEAFADIQNATETYEKWCRFIHSNRHVLPDGS 511

Query: 842 RITVAHGQMRERELEKVMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADSLGLAQL 901
            + +AHG +   E    ++       N+LV TT++ETG+ +      I+   D LGL QL
Sbjct: 512 GVVLAHGGLTNEENAAAIDALNTGDANVLVATTLVETGLTIKGLTHCIVMNPDRLGLVQL 571

Query: 902 HQLRGRVGRSHHQAYAYLLTPPPKAITKDAVKRLEAIASLEDLGAGFTLATHDLEIRGAG 961
           HQLRGR+ R     Y  LL PP   I+  +  RLE I+ +     G TLA  D+++RG G
Sbjct: 572 HQLRGRLARHGGVGYFDLLLPP--EISPKSKDRLELISQISH---GVTLAIEDMKLRGFG 626

Query: 962 ELL--GEEQSG--QIQSVGFTLYMEMLEQAVEAL 991
           +L   G  Q+G  Q    G+ + ++ L  A+E +
Sbjct: 627 DLTKSGRSQTGVNQRYLFGYKINLDDLNDAIELI 660