Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., ABC-type transport system, involved in lipoprotein release, permease component from Pseudomonas stutzeri RCH2

 Score =  104 bits (259), Expect = 5e-27
 Identities = 104/412 (25%), Positives = 182/412 (44%), Gaps = 60/412 (14%)

Query: 27  SRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILG------VLPQAVVT------E 74
           +R  + + T GI +G   +V + +++ G +A +  R LG      +LP   V       +
Sbjct: 21  NRMQTLLITFGIAVGSAVIVFITALITGLQANVVERTLGTQAHIRILPPDEVNRILPSDD 80

Query: 75  AAGKTTLSATPPDFVTALSTQRPPEPLVRSDAVVQSASQLAAG-------------LLIG 121
            +    L +     + ++   +    ++  DA + + S + +G              L+G
Sbjct: 81  DSWSLVLESPRAQRLRSIINWQDIRDVLDQDAQILAVSPVISGPAIARRGVARASVALLG 140

Query: 122 IEP---QQNDPIEQHLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEASQFT 178
           I+P   Q+  P+   LIAGR      G     +G  LAR L + +GDK+RL   E  +  
Sbjct: 141 IDPPRYQRIIPLANDLIAGRFVV---GAGNAVIGKELARDLGLGIGDKLRLDAGEGREAV 197

Query: 179 PLGRLPSQRNFTVAGIFNTG-SDVDGQLMVTHLRDAAKLLRYDAQ-TISGWRL--FFDDP 234
                       VAGIF  G  ++D + +   L+ A  LL      T+    +   F+  
Sbjct: 198 ----------VDVAGIFELGVRELDARYVYLDLKQAQTLLDLPGGITVIDTTVAEIFEAD 247

Query: 235 FVVSQLAEQPLPQDWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVA-AFNIISALIM 293
            +  +LA        +   W E  G+L  A+   ++M   M+ + VG++ AF I S L +
Sbjct: 248 RIARRLARLT---GLRAESWMETNGQLLNAL-SSQSMTTEMIRVFVGISVAFGIASVLAV 303

Query: 294 VVMEKQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEALG 353
            V+++  E+ IL+  G     +L +F++QG   G++G+  GG +G      L  +    G
Sbjct: 304 SVVQRTREIGILRAMGSPRGQILRVFLLQGGLLGLLGSACGGGVG----WGLVQVFNLFG 359

Query: 354 VALFSVGGSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRY 405
             LF       + +DP  + L +++A +  +LA   PA RA+   PA A+RY
Sbjct: 360 PRLFE------IPVDPTLVPLAMLVATITGVLAAAMPARRAARYDPAVAIRY 405