Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 83/396 (20%), Positives = 173/396 (43%), Gaps = 39/396 (9%)

Query: 31  SYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGVLPQAVVTEAAGKTTLSATPPDF-- 88
           S+++  G+ IG++++V+++S+  G +  + S I  +    +    +      A   +F  
Sbjct: 21  SFLTIIGVVIGILAIVSLISLGFGVQNYITSEITTIGANVISVLPSQNFGGPAVSKNFND 80

Query: 89  --VTALSTQRPPEPLVRS---DAVVQSASQLAAGLLIGIEPQQNDPIEQHL-----IAGR 138
             V+A+   R  E +V +      ++   Q   G ++ IEP +   +           GR
Sbjct: 81  NDVSAVRNVRGVEEVVAAWFGSYELEYRDQSHYGNVLVIEPSKFTHVYSKTWGYEPYKGR 140

Query: 139 VTALQAGEYQLFLGHLLARSL---NVTVGDKVRLMVTEASQFTPLGRLPSQRNFTVAGIF 195
                + +Y   +G+ LA +     + +GDK+ +      ++  +G L    N       
Sbjct: 141 WIE-DSDKYSCMIGYALATNSFDREIDIGDKITI---NDKKYKVIGILEETGNPRTENSV 196

Query: 196 NTGSDVDGQLMVTHLRDAAKLLRYDAQTISGWRLFFDDPFVVSQLAEQPLPQDWQWSDWR 255
               DV  +L    + +   ++    +  SG     +D  +VS+  +  L       ++ 
Sbjct: 197 ILSKDVGEELF--EINNEYNMMIVSVR--SG-----EDVNLVSEEIKDELEDSRGDENFS 247

Query: 256 EQRGE-LFQAVRMEKNMMGLML----GLIVGVAAFNIISALIMVVMEKQAEVAILKTQGM 310
               E L +++     ++ + L    G+ + V A  I + + M ++E++ ++ ILK  G 
Sbjct: 248 VLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGILKALGA 307

Query: 311 QSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFSVGGSLPVAIDPL 370
           ++  +L+IF+V+    G+ G +VG +LG+L+A  +  +    G  L     S  +     
Sbjct: 308 ENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAIEYIAAISGYGLIRAWISWEL----- 362

Query: 371 QIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
            IV V+V + V+ +L+  FPA   + + P + LR E
Sbjct: 363 -IVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397