Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis JJ

 Score = 66.2 bits (160), Expect = 2e-15
 Identities = 81/403 (20%), Positives = 172/403 (42%), Gaps = 53/403 (13%)

Query: 31  SYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGVLPQAVVTEAAGKTTLSATPPDFVT 90
           S ++  GI IG++++V+++S+  G +  +   I            AG + ++  P   +T
Sbjct: 21  SLLTIIGIVIGILAIVSLISLGYGVQNYITEEI----------SKAGASVITVYPSQQIT 70

Query: 91  ALSTQRP-PEPLVRSDAVVQSASQLAAGLLIGIEPQQNDPIEQHLIAGRVTALQAGEYQL 149
           +++  +   +  +++   V+    +  G   G +   +D  E +     V A ++  YQ+
Sbjct: 71  SIAMSKNFNDQDLKAVEGVRGVDVVLYGWFGGTQVTYHDQ-EYY---SSVFATKSSTYQI 126

Query: 150 FL----GHLLARSLNVTVGDKVRLMVTEASQFTPLGRLP--------SQRNFTVAGIFNT 197
           F     G+ L +   +   DK   ++  +       R          + + + V GI   
Sbjct: 127 FFTEAYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDREIDIGDKIEINDKKYKVVGILEQ 186

Query: 198 -GSDVDGQLMVTHLRDAAKLLRYDAQTISGWRLFF------DDPFVVSQLAEQPLPQDWQ 250
            G+  D   +V     A+++   D +    + +F       +D   VS+  E  L     
Sbjct: 187 IGNPDDDNSIVIPYEAASEVFDVDDE----YNMFMVKIKDGEDVTKVSEDIEDELEDSRG 242

Query: 251 WSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISALI-------MVVMEKQAEVA 303
             ++     E  Q      ++  ++   +VGVA  +++   +       M ++E++ ++ 
Sbjct: 243 DENFSVLTAE--QLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIG 300

Query: 304 ILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFSVGGSL 363
           ILK  G ++  +L+IF+V+    G+ G ++G +LG+L+A  +  +    G  L     S 
Sbjct: 301 ILKALGAENNTILSIFVVEAGFLGLFGGIIGTILGILIAKAIEYIAAISGYGLIRAWISW 360

Query: 364 PVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
            +      IV V+V + V+ +L+  FPA   + + P + LR E
Sbjct: 361 EL------IVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397