Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  215 bits (548), Expect = 2e-60
 Identities = 141/421 (33%), Positives = 225/421 (53%), Gaps = 36/421 (8%)

Query: 8   PISAFIGLRYLRGRSGDRFSRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGVL 67
           P++  IG R+ R R  + F  F+S+ STAGI +GV  L+ VLS MNGFE +L+ R+LGV+
Sbjct: 4   PLALSIGWRFYRARQSNSFISFISFASTAGIALGVAVLIIVLSAMNGFERELEQRLLGVI 63

Query: 68  PQAVVT---------EAAGKTTLSATPPDFVTALSTQRPPEPLVRSDAVVQSASQLAAGL 118
            QA V           A  +T L     + +TA +      P +R   +VQ         
Sbjct: 64  SQADVVGVNEPIADWRAVEQTALQI---EGITAAA------PFIRMQGLVQKPGGFQGLA 114

Query: 119 LIGIEPQQN---DPIEQHLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEAS 175
           ++GI+P+Q      + Q +      +L   +  + LG  L + L + VGD + L V +  
Sbjct: 115 VVGIDPEQEAKVSTLSQFMSPETWQSLSEDDNHIVLGESLLKKLGLEVGDTLALYVQDLD 174

Query: 176 -QFTPLGRLPSQRNFTVAGIFNTGSDVDGQLMVTHLRDAAKLLRYDAQTISGWRL----F 230
            +     R      F V+G++  G +++       +R AA +L    Q ++G R+     
Sbjct: 175 PEHAGSLRAAKSHRFVVSGVYRLGGELELTTAYIPMRYAANILNLH-QGVTGVRISVTQV 233

Query: 231 FDDPFVVSQLAEQPLPQDWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISA 290
           F+ P  + +L    L Q    SDW   +G L+Q +++ + +M L+L L++GVA FNI+S 
Sbjct: 234 FEAPAKIRELG-YALNQSVYISDWTRTQGHLYQDIQLVRTIMYLVLVLVIGVACFNIVST 292

Query: 291 LIMVVMEKQAEVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLM- 349
           L+M V +K +E+AIL T G+    V+ IFMVQGA +G++G  +GG++G+  A NL+++  
Sbjct: 293 LVMAVRDKASEIAILMTMGLSRLSVMGIFMVQGALNGLVGCALGGVIGIATAINLSAIAR 352

Query: 350 ---EALGVALFSVG----GSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEA 402
              + LG+ L S        LP  +    + LVI  A V+SL+ATL+PA++AS + PA+A
Sbjct: 353 DIEQLLGIQLLSADVYFVDFLPSELHMADVSLVIATAFVMSLIATLYPAWKASRIGPAQA 412

Query: 403 L 403
           L
Sbjct: 413 L 413