Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  313 bits (801), Expect = 8e-90
 Identities = 176/406 (43%), Positives = 259/406 (63%), Gaps = 14/406 (3%)

Query: 12  FIGLRYLRGRSGDRFSRFVSYMSTAGITIGVMSLVTVLSVMNGFEAQLKSRILGVLPQAV 71
           ++G RY R R  + F+ F++  + +GI +GV +L+ V SVMNG E QLK RILG +PQ  
Sbjct: 8   YVGYRYWRARKANAFASFITLFAVSGIFLGVAALIVVSSVMNGLEGQLKQRILGAVPQLT 67

Query: 72  VTEAAGKT--TLSATPPDFVTALSTQRPPEPLVRSDAVVQSASQLAAGLLIGIEPQQNDP 129
           V   A  +  T++A   + +T L   +   P V + A+VQSA+ + A  + G+ P+  + 
Sbjct: 68  VYTKAPLSDWTIAA---EKLTMLPGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEK 124

Query: 130 IE---QHLIAGRVTALQAGEYQLFLGHLLARSLNVTVGDKVRLMVTEASQFTPLGRLPSQ 186
           +    QH  +G  + L +G+YQ+ LG  LAR L V+ GD VRL+  +   ++PLG +PSQ
Sbjct: 125 LSAVAQHTYSGAFSELTSGQYQVILGSELARQLKVSPGDTVRLLSGDGVVYSPLGPVPSQ 184

Query: 187 RNFTVAGIFNTGSDVDGQLMVTHLRDAAKLLRYDAQTISGWRLFFDDPFVVSQLA---EQ 243
           R F V+ +F  GS VD  +   H +DA +L+R  +  I+  RL+ +DPF    LA   +Q
Sbjct: 185 RKFLVSAVFEMGSQVDAGVAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQQ 244

Query: 244 PLPQ---DWQWSDWREQRGELFQAVRMEKNMMGLMLGLIVGVAAFNIISALIMVVMEKQA 300
            L     +   SDWR+  G LF AV+MEKNMM LML LIV VAAFNI+SAL+M+V++K  
Sbjct: 245 ILTAQGIEATTSDWRDTYGHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMMVVDKTT 304

Query: 301 EVAILKTQGMQSQHVLAIFMVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFSVG 360
           +VA+LKTQG+++  V+ IF+VQG  + V+G  +G ++G+L+  NLN LM  LG+++   G
Sbjct: 305 DVAVLKTQGLRTSAVMGIFVVQGLLNAVLGLALGLVVGILITLNLNGLMATLGISILGAG 364

Query: 361 GSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
             LPV +   Q+ L+IV  +V++L+ATL+PA RA+ VQPA ALRYE
Sbjct: 365 QMLPVKLALGQLSLIIVGTLVVTLVATLYPALRAARVQPATALRYE 410