Pairwise Alignments

Query, 406 a.a., lipoprotein-releasing system transmembrane subunit LolC from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., ABC transporter, permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 77.0 bits (188), Expect = 9e-19
 Identities = 87/408 (21%), Positives = 181/408 (44%), Gaps = 61/408 (14%)

Query: 36  AGITIGVMSLVTVLSVMNGFEAQLKSRILGVLPQAVVTEAAGKTTLSATP----PDFVTA 91
           AGI IG+  ++  ++V+ GF+++++++++G      +       +    P       +TA
Sbjct: 2   AGIAIGLAVMIIAVAVVIGFKSEVRNKVIGFGSHIQIANLDAVNSYETHPIAVGDSMMTA 61

Query: 92  LSTQRPPEPLVR---SDAVVQSASQLAAGLLIGIEPQQNDP--IEQHLIAGRVTALQ--A 144
           LS       + R      ++++       +L G+ P+  DP  ++++L+ G + A    A
Sbjct: 62  LSGYPQVSHVQRYSTKPGMIKTDDAFQGMVLKGVGPEF-DPSFMQEYLVEGEIPAFSDSA 120

Query: 145 GEYQLFLGHLLARSLNVTVGDKVRLMVTEASQFTPLGRLPSQRNFTVAGIFNTG-SDVDG 203
              Q+ +   LA  + + +GDK+     + +           R  T+AGI+ T  S+ D 
Sbjct: 121 SSNQVLISKALATKMKLKLGDKIYTYYIQDNI--------RARRLTIAGIYQTNFSEYDN 172

Query: 204 QLMVTHLRDAAKLLRYDAQTISGWRLFFDDPFVVSQLA-EQPLPQDWQWSDWREQRGELF 262
             ++T L    +L  ++ + +SG  L   D   +  +  E  +  D Q    R++ G ++
Sbjct: 173 LFLLTDLYLVNRLNGWEPEQVSGVELQVRDYDKLEDITYEIAVDTDSQ----RDKFGGVY 228

Query: 263 QAVRMEK---------NMMGL----MLGLIVGVAAFNIISALIMVVMEKQAEVAILKTQG 309
               +E+         N++ L    +L L++GVA F +IS L+++++E+   + ILK  G
Sbjct: 229 YVRNIEQLNPQIFEWLNLLDLNVWVILFLMIGVAGFTMISGLLIIIIERTNMIGILKALG 288

Query: 310 MQSQHVLAIF-----------MVQGASSGVIGALVGGLLGVLLAANLNSLMEALGVALFS 358
             +  +   F           M+ G + G+    +    G+      N  ++ + V+ F+
Sbjct: 289 ADNFTIRKTFLWFAVFLIGKGMLWGNAIGLAFCFIQSQFGIFKLDPENYYVDTVSVS-FN 347

Query: 359 VGGSLPVAIDPLQIVLVIVLAIVLSLLATLFPAYRASSVQPAEALRYE 406
           V   L          L+    ++ S+L  + P+Y  + + PA ++RYE
Sbjct: 348 VWFFL----------LINAGTLLASVLMLIGPSYLITKINPASSMRYE 385