Pairwise Alignments

Query, 414 a.a., lipoprotein-releasing system transmembrane subunit LolE from Vibrio cholerae E7946 ATCC 55056

Subject, 416 a.a., lipoprotein releasing system transmembrane protein LolC, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (933), Expect = e-105
 Identities = 192/416 (46%), Positives = 273/416 (65%), Gaps = 2/416 (0%)

Query: 1   MFSSLALFIGGRFSRAKQRNKMVSFISLSSTIGIAVGVAVIIIGLSAMNGFERELQTRVL 60
           M   LAL IG RF RA+Q N  +SFIS +ST GIA+GVAV+II LSAMNGFEREL+ R+L
Sbjct: 1   MKGPLALSIGWRFYRARQSNSFISFISFASTAGIALGVAVLIIVLSAMNGFERELEQRLL 60

Query: 61  SVIPHGEFEGVRGPVERWPDLMAQAARHPQIVAAAPYVKITALAESGTQLKAIEVRGVDP 120
            VI   +  GV  P+  W  +   A +   I AAAP++++  L +     + + V G+DP
Sbjct: 61  GVISQADVVGVNEPIADWRAVEQTALQIEGITAAAPFIRMQGLVQKPGGFQGLAVVGIDP 120

Query: 121 QREQAVSRLSQFITAQAWQDFRPGQQQVILGQGVAEKLGVQVGDFITLMIPSANS--GDK 178
           ++E  VS LSQF++ + WQ        ++LG+ + +KLG++VGD + L +   +      
Sbjct: 121 EQEAKVSTLSQFMSPETWQSLSEDDNHIVLGESLLKKLGLEVGDTLALYVQDLDPEHAGS 180

Query: 179 VQAPKRVRVKVSGLLALNGQIDHSLALLPLEDAQAYAHLGSGVTGISVKVADVLQATQIV 238
           ++A K  R  VSG+  L G+++ + A +P+  A    +L  GVTG+ + V  V +A   +
Sbjct: 181 LRAAKSHRFVVSGVYRLGGELELTTAYIPMRYAANILNLHQGVTGVRISVTQVFEAPAKI 240

Query: 239 RDVGNQLNEYVYLHSWQQKYGFLYRDIQLVRTIMYLVMVLVIGVASFNIVSTLMMAVKDR 298
           R++G  LN+ VY+  W +  G LY+DIQLVRTIMYLV+VLVIGVA FNIVSTL+MAV+D+
Sbjct: 241 RELGYALNQSVYISDWTRTQGHLYQDIQLVRTIMYLVLVLVIGVACFNIVSTLVMAVRDK 300

Query: 299 AGEIAILRTMGATDGLIKRIFVWQGVFSGVLGSVVGSVLGMVVAFNLTPLIKGLEHLIGH 358
           A EIAIL TMG +   +  IF+ QG  +G++G  +G V+G+  A NL+ + + +E L+G 
Sbjct: 301 ASEIAILMTMGLSRLSVMGIFMVQGALNGLVGCALGGVIGIATAINLSAIARDIEQLLGI 360

Query: 359 QFLSGDIYFVDFLPSQVEWADVVLVSGTAIVLSLLATWYPARRASRLNPAQVLSSK 414
           Q LS D+YFVDFLPS++  ADV LV  TA V+SL+AT YPA +ASR+ PAQ L+ +
Sbjct: 361 QLLSADVYFVDFLPSELHMADVSLVIATAFVMSLIATLYPAWKASRIGPAQALAGR 416