Pairwise Alignments

Query, 414 a.a., lipoprotein-releasing system transmembrane subunit LolE from Vibrio cholerae E7946 ATCC 55056

Subject, 385 a.a., ABC transporter, permease protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 91.3 bits (225), Expect = 5e-23
 Identities = 85/397 (21%), Positives = 184/397 (46%), Gaps = 41/397 (10%)

Query: 33  GIAVGVAVIIIGLSAMNGFERELQTRVLSVIPHGEFEGVRG-------PVERWPDLMAQA 85
           GIA+G+AV+II ++ + GF+ E++ +V+    H +   +         P+     +M   
Sbjct: 3   GIAIGLAVMIIAVAVVIGFKSEVRNKVIGFGSHIQIANLDAVNSYETHPIAVGDSMMTAL 62

Query: 86  ARHPQIVAAAPYVKITALAESGTQLKAIEVRGVDPQREQAVSRLSQFITAQAWQDFRPG- 144
           + +PQ+     Y     + ++    + + ++GV P+ +   S + +++       F    
Sbjct: 63  SGYPQVSHVQRYSTKPGMIKTDDAFQGMVLKGVGPEFDP--SFMQEYLVEGEIPAFSDSA 120

Query: 145 -QQQVILGQGVAEKLGVQVGDFI-TLMIPSANSGDKVQAPKRVRVKVSGLLALNGQIDHS 202
              QV++ + +A K+ +++GD I T  I      D ++A    R+ ++G+   N     +
Sbjct: 121 SSNQVLISKALATKMKLKLGDKIYTYYIQ-----DNIRAR---RLTIAGIYQTNFSEYDN 172

Query: 203 LALLPLEDAQAYAHLGSG----VTGISVKVADVLQATQIVRDVG-------NQLNEYVYL 251
           L LL   D      L       V+G+ ++V D  +   I  ++        ++     Y+
Sbjct: 173 LFLLT--DLYLVNRLNGWEPEQVSGVELQVRDYDKLEDITYEIAVDTDSQRDKFGGVYYV 230

Query: 252 HSWQQKYGFLYRDIQLVRTIMYLVMVLVIGVASFNIVSTLMMAVKDRAGEIAILRTMGAT 311
            + +Q    ++  + L+   +++++ L+IGVA F ++S L++ + +R   I IL+ +GA 
Sbjct: 231 RNIEQLNPQIFEWLNLLDLNVWVILFLMIGVAGFTMISGLLIIIIERTNMIGILKALGAD 290

Query: 312 DGLIKRIFVWQGVFSGVLGSVVGSVLGMVVAFNLTPLIKGLEHLIGHQFLSGDIYFVDFL 371
           +  I++ F+W  VF    G + G+ +G+   F        ++   G   L  + Y+VD +
Sbjct: 291 NFTIRKTFLWFAVFLIGKGMLWGNAIGLAFCF--------IQSQFGIFKLDPENYYVDTV 342

Query: 372 PSQVEWADVVLVSGTAIVLSLLATWYPARRASRLNPA 408
                    +L++   ++ S+L    P+   +++NPA
Sbjct: 343 SVSFNVWFFLLINAGTLLASVLMLIGPSYLITKINPA 379