Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  491 bits (1265), Expect = e-143
 Identities = 258/581 (44%), Positives = 384/581 (66%), Gaps = 7/581 (1%)

Query: 7   ESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI 66
           +S+   + RL  Y+  Y     +S I  V+ A++   +  +LK  LD      ++ F+ +
Sbjct: 7   QSSMTIYLRLLKYVLPYWGAFAISIIGFVLFASSQPMLADMLKHFLDALQKPNDTQFMGV 66

Query: 67  -----LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQEST 121
                +P +I+ +   +G+  F  +Y L+ V+  VV  +R  LF++ + +P R+FD  ++
Sbjct: 67  SLVLGVPLLIVLIAVYQGIGSFLGNYYLAKVARGVVHDLRCALFDNLLTLPNRYFDNHNS 126

Query: 122 GGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA 181
           G L+SRITY+   V GA + A+  ++REG +++ L   + +++W+++LVL+ + PV+A  
Sbjct: 127 GHLISRITYNVTMVTGAATDAIKVVIREGLTVVFLFGYLLYSNWKMTLVLLAILPVIAIL 186

Query: 182 ISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQT 241
           +S  SK+FRK S+ +Q AMG VT  A + ++G++VV S+GG+  E +RF K S     ++
Sbjct: 187 VSSASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGESYEIERFHKASADNMNRS 246

Query: 242 MKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL 301
           + +   QSI  P++Q++  + +  +++L  V  +R + + G      +A   L +P++ L
Sbjct: 247 LGMTRTQSIYTPMLQLVIYIGMAVLMYL--VLYLRGDASAGELVAYITAAGLLPKPIRQL 304

Query: 302 TSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSH 361
           + V++  Q+G+AA  ++F  +D E E D G  E  RVNG ++V++++F Y G EK  L  
Sbjct: 305 SEVSATIQKGLAAADSIFEQLDEEPEVDTGTKEMARVNGRLEVRNLSFQYPGTEKIVLDD 364

Query: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
           +SF+  +G+ +ALVGRSGSGKST+ANL  RFY  D G I LDG DV  YKLTNLRRH AL
Sbjct: 365 ISFTAEEGQMIALVGRSGSGKSTLANLIPRFYHHDQGQILLDGVDVEQYKLTNLRRHIAL 424

Query: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
           V+Q V LFND++ NNIAY    +   E + +AA  A+A EFIE MPQG DT++GENG  L
Sbjct: 425 VTQQVTLFNDSVTNNIAYGDLADAPFESVRKAAEDAYAAEFIEQMPQGYDTLVGENGVLL 484

Query: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST 541
           SGGQRQR+AIARALL++AP+LILDEATSALDTESER IQAALD++ K +T LVIAHRLST
Sbjct: 485 SGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDQVIKGRTTLVIAHRLST 544

Query: 542 IEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFGE 582
           IE+AD IL++D+G I+ERG HA+LLA +G YA+LH   F E
Sbjct: 545 IEKADLILLMDKGRIVERGTHAELLALNGFYARLHEKDFVE 585