Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  317 bits (813), Expect = 7e-91
 Identities = 193/569 (33%), Positives = 311/569 (54%), Gaps = 10/569 (1%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVR 78
           +I  Y+  +  + +AL++ A     M   ++ L+D+GF     + L     + + L+   
Sbjct: 16  FIAPYRKQVAGALLALIVTAGITLSMGQGIRLLVDQGFMTRSPHLLNQSIGLFMVLVVGL 75

Query: 79  GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
            +  FA  Y +SW+   VV  +RR++FNH +++   F++   +  + SR+T D+  +   
Sbjct: 76  AIGTFARFYLVSWIGERVVADIRRQVFNHLVYLHPGFYENNRSSEIQSRLTADTTLLQSV 135

Query: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
              +L   +R    ++G + L+F  + +L+ ++++  P+V   I    +R R +SR  Q 
Sbjct: 136 IGSSLSLFLRNALMVVGGIVLLFITNPKLTSIVVIALPLVLAPILVFGRRVRSLSRQSQD 195

Query: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
            +  V S   + L   K V +Y  Q  + +RF            K ++ ++    ++ ++
Sbjct: 196 RIADVGSYVSETLGQIKTVQAYNHQVQDEQRFSVTVEQAFDTARKRIAQRAWLITLVIVL 255

Query: 259 ASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
              A+  +L++  +D I   ++ G     V +S + G       L+ V  E QR   A +
Sbjct: 256 VLGAVGVMLWVGGMDVIAGRISGGELAAFVFYSLIVG--SAFGTLSEVIGELQRAAGAAE 313

Query: 317 TLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKT 371
            +  L+     ++          ERV G++ ++ V F+Y  + +  A+  +  +I  G+T
Sbjct: 314 RIAELLRSQNIIQPPASGLVTLPERVRGDLRLEGVRFSYPSRPDSYAVDGLDLTIKAGET 373

Query: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
           +ALVG SG+GKST+ +L  RFYD   G I +D   +      +LRRHFALVSQN  LF  
Sbjct: 374 LALVGPSGAGKSTVYDLLLRFYDPVQGQILIDDVPLTRLDPLDLRRHFALVSQNPALFFG 433

Query: 432 TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491
           T+  NI Y   G  T EQ+ +AA+ AHA +FIE MP G  T +G+ G  LSGGQRQR+AI
Sbjct: 434 TVEENIRYGNPGA-TSEQVREAAQIAHAHDFIEKMPGGYQTHLGDGGQGLSGGQRQRLAI 492

Query: 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVV 551
           ARALL DAP+L+LDEATSALD +SE  IQ AL  L KN+T LVIAHRL+T++ AD I V+
Sbjct: 493 ARALLVDAPILLLDEATSALDAQSEHLIQQALPNLMKNRTTLVIAHRLATVKNADRIAVM 552

Query: 552 DEGEIIERGRHADLLAQDGAYAQLHRIQF 580
           D+G+++  G H +L+A +  YA+L  +QF
Sbjct: 553 DQGKVVAVGTHQELVASNALYARLAALQF 581