Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., ATPase from Synechococcus elongatus PCC 7942

 Score =  324 bits (831), Expect = 5e-93
 Identities = 185/504 (36%), Positives = 297/504 (58%), Gaps = 6/504 (1%)

Query: 83  FASSYCLSWVSGNVVMQMRRRL--FNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATS 140
           F   Y   W +    +Q   RL  + H   + + FF++ STG LLS +  D  Q+     
Sbjct: 84  FEYLYAWQWRTLAQTLQHELRLDAYGHLQELELSFFEERSTGQLLSVLNDDINQLERFLD 143

Query: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAM 200
                I++   +++ +   M + S  ++ + I+  PV+ +      +R       ++   
Sbjct: 144 HGANEILQVTTTVLAVGGAMAYLSPTVAGLAILPIPVILWGSLRFQRRLAPRYARVREQA 203

Query: 201 GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIAS 260
           G +++     L G   + S+  +  E+ R  + S++ RQ   + ++  S   P+I+    
Sbjct: 204 GLISARLANNLGGIATIKSFTAEAFEKGRVAEDSDAYRQANRRAIALSSAFVPLIRFAIL 263

Query: 261 LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320
            A  A+L++  +++I   L  GT++ +      L+ PL +L  V  ++QR MA+ Q +  
Sbjct: 264 FAFIAILYVGGMETINGRLDVGTYSFLVFITQRLLWPLTSLGRVLDDYQRAMASTQRVMD 323

Query: 321 LMDLETERDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRS 378
           L+ +  +  +G+      +V G V  + +TF Y+ +E P++  ++ +IP G+T+A+VG +
Sbjct: 324 LLAIPVQIPSGRQSLPIGQVQGAVQFEGITFAYRDRE-PSVIDLNLNIPAGQTIAIVGAT 382

Query: 379 GSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIA 438
           GSGKST+  L  RFY+  +G I LDG D+RD KL +LR+    VSQ+V LF+ ++A NIA
Sbjct: 383 GSGKSTLVKLLLRFYEPQTGRILLDGIDLRDLKLKDLRQAIGFVSQDVFLFHGSVAENIA 442

Query: 439 YAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498
           Y +  + T+ +IEQAA+ A A EFI ++PQG DTV+GE G  LSGGQRQR+AIARA+L+D
Sbjct: 443 YGSF-DATQTEIEQAAKLAEAHEFIMDLPQGYDTVVGERGQKLSGGQRQRLAIARAILKD 501

Query: 499 APVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE 558
            P+LILDEATSA+D E+E AIQ +L+++ +++T L IAHRLSTI  AD I V+D+G ++E
Sbjct: 502 PPILILDEATSAVDNETEAAIQRSLEQITRDRTTLAIAHRLSTIRHADCIYVMDQGRLVE 561

Query: 559 RGRHADLLAQDGAYAQLHRIQFGE 582
            G H +LLA DG YA L ++Q GE
Sbjct: 562 AGHHDELLALDGLYANLWKVQTGE 585