Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  313 bits (803), Expect = 1e-89
 Identities = 186/566 (32%), Positives = 309/566 (54%), Gaps = 5/566 (0%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVR 78
           Y+  Y+   + + ++L I AA    +   ++ ++D GF N++S F+     M++ L  V 
Sbjct: 23  YLSRYRGLAIGAAVSLTIAAATTLTLPLAVRRMIDHGFSNSDSGFINTYFSMLMVLAVVL 82

Query: 79  GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
            L+  A  Y +  +   +V  +RR +F   M +   FFD   +G ++SR+T D+ Q+  A
Sbjct: 83  ALASAARYYFVISLGERIVADLRRDVFARVMQLSASFFDVNQSGEIVSRLTADATQIKSA 142

Query: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
                   +R     +G + +M + S +LS +++   P++ F +    +  R+ SR  Q 
Sbjct: 143 VGATASVALRNLILCLGAMGMMVYTSPKLSSLVLAAIPLIVFPLVGFGRSVRRRSREAQD 202

Query: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
            +   ++ A + +   + V ++ G+E  R R+     +  +       A+S+       +
Sbjct: 203 MLAAASAYAGEAIAATRTVQAFNGEESARSRYGSAVEAAYRAARAATRARSVLTAFAITM 262

Query: 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318
              ++ AVL+  + D +   L+ GT              L AL+ V  E  +   A + L
Sbjct: 263 VFGSVVAVLWFGARDVLADSLSAGTLGQFLLYSVFAAGSLGALSEVWGELSQAAGAAERL 322

Query: 319 FGLMDLETERDNGKYEAER---VNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVAL 374
             L++   E +  ++         G V+ ++V F Y  + +  +L  +SF++  G+TVA+
Sbjct: 323 NELLNEVPEIEAPEHPVAMPVPATGAVEFENVHFAYPARPDYKSLRGLSFAVRPGETVAI 382

Query: 375 VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
           VG SG+GKST+ ++  R+YD   G+I +DG DVR      LR   A+V Q+V +F  ++ 
Sbjct: 383 VGPSGAGKSTVFSMLLRYYDPAKGTIRVDGTDVRAVDPEELRERLAIVPQDVTIFATSVH 442

Query: 435 NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
           +NIA+    + +RE +  AA  A A EFI  + +G DT++GE G +LSGGQRQR+AIARA
Sbjct: 443 DNIAFGVP-DASREAVRAAAVAAQADEFIGRLDRGYDTLVGERGVTLSGGQRQRIAIARA 501

Query: 495 LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
           +L++AP+L+LDEATSALD ESE  +Q ALD L + +T LVIAHRL+T+ +AD ILV++ G
Sbjct: 502 ILKNAPILLLDEATSALDAESETLVQKALDVLMQERTTLVIAHRLATVLKADRILVMEHG 561

Query: 555 EIIERGRHADLLAQDGAYAQLHRIQF 580
            I+E G H  L+ Q G YA+L R+QF
Sbjct: 562 RIVEEGTHESLIRQGGLYAKLARLQF 587