Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., ABC transporter, ATP-binding/permease protein, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  297 bits (760), Expect = 9e-85
 Identities = 175/567 (30%), Positives = 310/567 (54%), Gaps = 4/567 (0%)

Query: 16  LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM 75
           L +++R YK  ++ + I L+I + A   +   +K ++DEGF   ++  L  L ++++G+ 
Sbjct: 23  LGSFLRPYKLRVITALICLLIGSLAWLALGQGVKLIVDEGFVAGDAARLNQLVWLLVGIA 82

Query: 76  FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQV 135
            +   + F   Y +SW+   V   +R R++++ + +P  F+ +  TG ++SR T DS  +
Sbjct: 83  AISSSAVFCRFYLMSWLGERVSNDIRARVYDNLLTLPPAFYAKLRTGEVISRFTADSTLL 142

Query: 136 AGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195
                 +    +R   S++G + +M   S +L+ +++V  P V   I    ++ R +SR+
Sbjct: 143 QTVIGSSFSMALRSFVSVLGGIAMMAITSVKLTALVLVAVPAVLVPILIFGRKVRTLSRD 202

Query: 196 MQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVI 255
            Q  +  + +  ++ L     V SY  ++V+R +F  +   +     + +  +++    +
Sbjct: 203 SQDRVADLGAYIDESLHEIHTVQSYTHEQVDRDKFAGLLGKVLGSAGRRIQFRALLIAGV 262

Query: 256 QMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAAC 315
             +   A+  ++++ + D +   ++ G  +        +      ++ V  + QR   A 
Sbjct: 263 MFLTIAAIALMIWVGARDVMIGAISAGELSAFLFYALLVAGATATISEVIGDVQRASGAA 322

Query: 316 QTLFGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTV 372
           + L  L +  +E    ++      +++G++ ++ ++F Y G +  AL  +S  I  G+ V
Sbjct: 323 ERLKELSEAVSEVPQARHPVALPAKLSGDIRIEGLSFCYPGTDVRALDEISVHIRPGEKV 382

Query: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDT 432
           ALVG SG+GKST+  L  RFY  DSG+I LD  D+ +  L  LRR FALV Q   +F D+
Sbjct: 383 ALVGESGAGKSTLFQLLGRFYAPDSGTIYLDDTDIANADLQALRRAFALVPQESVIFADS 442

Query: 433 IANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492
           +  N+ Y  + + T ++++ A   A A +FIE MP+G  + +GE G  LSGGQ+QR+AIA
Sbjct: 443 VLENVRYG-KVDATLDEVKAACVAARAHDFIEAMPEGYHSYLGERGVKLSGGQKQRIAIA 501

Query: 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVD 552
           RA+L   PVL+LDEATSALD  SER ++ ALD L   +T L+IAHRL+T+  AD ILV+D
Sbjct: 502 RAILASRPVLLLDEATSALDAVSERYVKEALDTLICGRTSLIIAHRLATVINADRILVMD 561

Query: 553 EGEIIERGRHADLLAQDGAYAQLHRIQ 579
           +G+II +G H +LL     Y +   +Q
Sbjct: 562 KGKIIAQGSHTELLESSQQYREFASLQ 588