Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., ABC transporter, ATP-binding protein MsbA (RefSeq) from Shewanella amazonensis SB2B

 Score =  634 bits (1634), Expect = 0.0
 Identities = 321/597 (53%), Positives = 437/597 (73%), Gaps = 17/597 (2%)

Query: 1   MSLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFG--- 57
           M+   ++  W  FKRL  Y++  K+  +VS IAL++  A D   I+ ++P +D+GF    
Sbjct: 1   MTTAHNQEVWTVFKRLMGYLKPMKSIFIVSVIALLVYGAVDATFIAFIQPFIDKGFSGVG 60

Query: 58  -------------NAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRL 104
                        ++ ++ L   PF+++GL  +RGL+ F S+Y +S++S  ++M MR+++
Sbjct: 61  MSGSVNMGTTSGFDSGNSVLFWAPFVVVGLFTLRGLANFVSTYGISYMSAKLIMDMRQQV 120

Query: 105 FNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNS 164
           F H++ +PV + D+E++G L+SR+T+D+EQ+A A+  AL+SIVR+G ++IG+L LMF+NS
Sbjct: 121 FEHYLTLPVSYIDKENSGNLISRVTFDTEQIARASGSALISIVRDGVTVIGMLGLMFYNS 180

Query: 165 WQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQE 224
           W+LSL +++V P++   I+ VS+RFRKISR +Q+AMG VT+  EQM+KGHK VL++GGQE
Sbjct: 181 WKLSLCILIVGPIIGLVIATVSRRFRKISRQIQSAMGGVTAVTEQMIKGHKNVLAFGGQE 240

Query: 225 VERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTF 284
            E KRF +V++  R Q MKL  AQ+I+ P I +I S AL  VL+ AS D++++ELT GTF
Sbjct: 241 TEAKRFAQVNDHNRHQNMKLAVAQAISQPTIMIIGSFALAFVLYAASFDALKSELTAGTF 300

Query: 285 TVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDV 344
             V +AM   ++P+K LT V +EFQRG+AAC T+F L+D   E D G +E ERV G V  
Sbjct: 301 ATVLAAMMATLQPIKNLTRVNAEFQRGIAACTTVFELLDTPAEHDKGTFETERVKGHVRF 360

Query: 345 KDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLD 403
           + V F Y+G+E  AL  +SF +P GKT+ALVGRSGSGKSTIA+L  RFY  ++ G+I LD
Sbjct: 361 EQVAFRYEGQEGRALDGISFDVPPGKTLALVGRSGSGKSTIASLINRFYGGLEQGAIELD 420

Query: 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFI 463
           G +V DY+L NLR   ALVSQ V LFNDTIANNIAYA     TREQIEQAA  AHAMEFI
Sbjct: 421 GVNVEDYRLKNLRSQVALVSQQVTLFNDTIANNIAYACPWAVTREQIEQAATLAHAMEFI 480

Query: 464 ENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAAL 523
             +P GLDT +GENG  LSGGQRQR+AIARA+LR+APVLILDEATSALDTESE+AIQ  L
Sbjct: 481 SKLPSGLDTQVGENGVLLSGGQRQRIAIARAMLRNAPVLILDEATSALDTESEKAIQEGL 540

Query: 524 DELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580
           + L++N+T +VIAHRLSTIE ADEILV+++G I+ERG H  LLAQDG YA+L+++QF
Sbjct: 541 ENLRQNRTSIVIAHRLSTIESADEILVIEQGRIVERGNHKSLLAQDGMYAKLYQMQF 597