Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., ABC transporter, ATP-binding protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  293 bits (750), Expect = 1e-83
 Identities = 192/586 (32%), Positives = 311/586 (53%), Gaps = 21/586 (3%)

Query: 6   DESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR 65
           ++ NW+    LW Y+  +K  ++++ + L+I   A   M  LLK L+D+      S  L 
Sbjct: 12  EKLNWKVLGLLWPYLLEFKGRILLALLCLLIAKLASVGMPFLLKGLVDD-LDAGRSEALV 70

Query: 66  ILPFMIL----GLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQEST 121
            +P  ++    G   +  ++G         V+   + ++   +F+H   + + F  +  T
Sbjct: 71  AVPLGLVLAYGGTRLLMSITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRT 130

Query: 122 GGLLSRITYDSEQVAGATSRALVSIVR---EGASIIGLLTLMFWNSWQLSLVLIVVAPVV 178
           GGL   I   +  V+      + +IV    E A ++G+  + +   WQ + + +V + ++
Sbjct: 131 GGLSRDIERGTSGVSFLMRFMVFNIVPTLLEIALVVGIFFVKY--GWQFAGITLV-SVIL 187

Query: 179 AFAISFVSKRFR-KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSM 237
               S V+  +R +  R    A     + A   L  ++ V  +  +  E   +DK   + 
Sbjct: 188 YIGFSVVATEWRTEYVRQAAKADSVSNTRAIDSLLNYETVKYFNNERFESAHYDKALEAW 247

Query: 238 RQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRP 297
                    +    +    +I ++A+ A++ LA+     +++T G F ++ + M  L  P
Sbjct: 248 ETAKRNNRLSLFALNGGQALIIAIAMTAMMALAAKHVTESQMTLGDFVLINAFMMQLFMP 307

Query: 298 LKALTSVTSEFQRGMAACQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQG 353
           L  L  V  E +  +A  + +FGL+D    +E + D   +  +R  GE+  + V F+Y  
Sbjct: 308 LNFLGFVYREIRGALANIERMFGLLDKTPRIEDKTDAVNFACQR--GEIRFEQVNFSYD- 364

Query: 354 KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLT 413
            E+  LS VSF++  G+ VA+VG SG+GKST+  L  RFYDVDSG IC+D  D+RD    
Sbjct: 365 -ERTILSDVSFTVAPGEKVAVVGDSGAGKSTLIKLLFRFYDVDSGRICIDDMDLRDMTQD 423

Query: 414 NLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTV 473
           +LRR  A+V Q+  LFND++  NI Y    + + E++    R AH  +F+  +P G DT 
Sbjct: 424 SLRRAIAIVPQDTVLFNDSLLENIRYGRP-DASDEEVRAVVRHAHLADFVAALPSGWDTK 482

Query: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533
           +GE G  LSGG++QRVAIARA+L+ +P+L+ DEATS+LD+ +E+AI  AL E+    T L
Sbjct: 483 VGERGLKLSGGEKQRVAIARAMLKGSPILVFDEATSSLDSRAEKAILDALKEVATGHTSL 542

Query: 534 VIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
           V+AHRLSTI  AD ILV+ +G I E+G H  LLA DG YA+L  IQ
Sbjct: 543 VVAHRLSTIVDADRILVLSKGRIAEQGTHKQLLAMDGLYARLWHIQ 588