Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 579 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  351 bits (900), Expect = e-101
 Identities = 207/573 (36%), Positives = 315/573 (54%), Gaps = 17/573 (2%)

Query: 20  IRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRG 79
           +R +   + ++ + +++ AAA   +  +LKP +D     ++   L  +   IL    V+ 
Sbjct: 1   MRPHLGTIALAVMWMLVLAAATVAVAHMLKPAIDGIVVGSDPQALWGIGLGILLAFAVKA 60

Query: 80  LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGAT 139
           +S F S   ++      V   R RL+ H   M + FF   S   L +R T D   +  A 
Sbjct: 61  VSNFFSVVLVAKAGLAAVSDARNRLYRHLSEMDLGFFLAHSASALAARFTVDLHLLRLAV 120

Query: 140 SRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTA 199
           S  L S+ R+  ++IGL+   FW  WQ++L+  +  P+  + ++ + +R R+I+   Q  
Sbjct: 121 SNGLTSLGRDLMTLIGLVAYTFWVDWQMALLAYIALPLAIWPVARLGRRIRRIAGRTQRD 180

Query: 200 MGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIA 259
           +G + +   Q L+G ++V  YG +E+ER R  ++  +++ Q+ K    +++  P+++ + 
Sbjct: 181 LGSLNAQLTQTLRGIRMVKIYGAEEMERARVHRLIAAVQTQSFKAEWTRALVTPIMEGVV 240

Query: 260 SLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLF 319
            LA  A L+      +  E+TPG  T    A+    +P K L ++ +  Q G+AA   ++
Sbjct: 241 GLAAGAALYYGGARVLAGEVTPGDLTAFLGAVMLAYQPAKRLANLHTILQEGLAAADRMY 300

Query: 320 GLMDLE--TERDNGKYEAERVNGEVDVKDVTFTYQG--------------KEKPALSHVS 363
            L+DL+       G        G V   DVTF Y G                 PAL  V 
Sbjct: 301 HLLDLKPAVAEAPGAPPLRPGPGTVRFDDVTFAYDGGPGPELGDDASGPAAAPPALRGVD 360

Query: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423
            ++  G  VALVG SG+GKST+ NL  R +D   G + +DG DVR     +L     LVS
Sbjct: 361 LTLEAGTVVALVGPSGAGKSTLMNLIPRLHDPQRGRVLIDGQDVRAVSFASLWARIGLVS 420

Query: 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483
           Q+V +F+DT+  NIAY    E + E++E+AAR+A A +FI  +P G DT +GE G  LSG
Sbjct: 421 QDVVVFDDTVRANIAYGRP-EASAEEVERAARRAAAHDFIAALPDGYDTRLGEQGVRLSG 479

Query: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
           GQRQR+ IARA L+DAP+L+LDE T+ALDTESER +Q+AL  L   +T L+IAHRLSTI 
Sbjct: 480 GQRQRLCIARAFLKDAPILLLDEPTAALDTESERLVQSALAALMAGRTCLIIAHRLSTIA 539

Query: 544 QADEILVVDEGEIIERGRHADLLAQDGAYAQLH 576
            AD I V+ EG ++E G HA LLA+DG YA+LH
Sbjct: 540 GADVIHVMAEGAVVESGDHAGLLAKDGLYARLH 572