Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  363 bits (933), Expect = e-105
 Identities = 206/553 (37%), Positives = 314/553 (56%), Gaps = 4/553 (0%)

Query: 26  GLVVSTIALVINAAADTYMIS-LLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFA 84
           GL+   +  ++  AA T  I+ L+KP +++ F   + + L ++         ++GL+ + 
Sbjct: 36  GLIALAVLCMLAVAASTSAIAWLMKPAVNDVFARHDRDVLMLIALAFPVAFVLKGLANYG 95

Query: 85  SSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALV 144
               ++ V   VV + R  L++H   M + FF Q+ T  L+SR T D   +    +  ++
Sbjct: 96  QRTLMNRVGLRVVQRCREALYDHLQGMDIAFFAQQQTAALVSRFTVDLTLLKNTITSGIM 155

Query: 145 SIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
            + R+  +++ L+  +F    +L+L+ + V P     I+ + KR RK +R MQ   G + 
Sbjct: 156 VVGRDAVTMVSLVVSLFLLDIELALIAVTVFPAAVLPIALLGKRVRKAARGMQAQSGQLD 215

Query: 205 SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
           +   Q+ +  +VV  Y   E ER R     + + +  M+     +    V+++++  A  
Sbjct: 216 ALLLQVFQAIRVVKVYNAGEHERARVAATVDRIYRHLMRSERIGAAISMVVEILSGFAFA 275

Query: 265 AVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL 324
           AV+          +L PGTF    +++F L +P+K +  V    Q GMAA + ++G++D 
Sbjct: 276 AVVIYGGQRVTAGDLDPGTFFAFITSLFLLYQPIKRIGGVNVVAQEGMAAVERMYGVIDT 335

Query: 325 ETERDNGKYEAERV--NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382
                 GK     V   GE+   DV  TY  +E PAL  +SF  P G TVALVGRSG+GK
Sbjct: 336 PPALREGKDAPALVVGGGEIVFDDVRLTYPTQEGPALDGLSFRAPAGATVALVGRSGAGK 395

Query: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
           ST   L  RFYD D G + +DG DVR     +L    A+V+Q + LF+D++  NIAY   
Sbjct: 396 STALQLVPRFYDADGGRVLIDGQDVRAVTFRSLWAAIAMVTQEIILFDDSVRANIAYGRP 455

Query: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL 502
           G  ++ +IE AAR A A +FI  +P+G DTVIGE GT LSGGQRQR+ IARA+L++AP+L
Sbjct: 456 GA-SQAEIEDAARHAAAHDFILALPEGYDTVIGEQGTRLSGGQRQRLVIARAMLKNAPIL 514

Query: 503 ILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562
           +LDEATSALDTESER ++ A + L++ +T +V+AHRLST+  AD I V+D G I+E G H
Sbjct: 515 LLDEATSALDTESERHVRQAFERLRQGRTCIVVAHRLSTVMNADIIHVIDAGRIVESGSH 574

Query: 563 ADLLAQDGAYAQL 575
           A LLA+ G YA L
Sbjct: 575 AALLAEGGLYADL 587