Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 617 a.a., ABC transporter, transmembrane region (NCBI) from Rhodospirillum rubrum S1H

 Score =  307 bits (786), Expect = 9e-88
 Identities = 192/484 (39%), Positives = 277/484 (57%), Gaps = 13/484 (2%)

Query: 103 RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTL--M 160
           R F H   + +RF     TGGL SR+     +      R  V  +R G S+I L+ +  +
Sbjct: 120 RTFRHLHGLSLRFHLDRQTGGL-SRVIERGTRAIEVVLRQFV--LRAGPSLIELVMVCGV 176

Query: 161 FWN--SWQLSLVLI-VVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
            W    W  ++V++  +A  VA+ ++    R     R+M T     +S A   L  ++ V
Sbjct: 177 LWTLYDWTYAVVMVGALAVYVAWTLAITEWRL-DFRRSMNTHDAEASSKAIDSLINYETV 235

Query: 218 LSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRA 277
             +G +E E KRFD+  ++  +  +K   + S+ +     I SL+L AV+ +A+VD    
Sbjct: 236 KYFGNEEHEAKRFDRALSAYEEVAVKSHRSLSLLNVGQSAIISLSLVAVMIMAAVDIRGG 295

Query: 278 ELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAER 337
            +TPG F +V + +  L  PL  L  V  E ++G+   + LFGL+D   E  +    A+ 
Sbjct: 296 RMTPGDFVLVNTYLLQLYVPLNFLGMVYREVKQGLVDMEVLFGLIDRPPEVADPANAADL 355

Query: 338 V--NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395
           V   G V  + V F Y   E+  L  VS  IP G T+A+VG SG+GKST++ L  RFYDV
Sbjct: 356 VVRGGAVRFEGVRFAYN-PEREVLKGVSLEIPAGGTLAVVGHSGAGKSTLSRLLFRFYDV 414

Query: 396 DSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAAR 455
             G + +DG D+RD    +LRR   +V Q+  LFNDTI  NIAY   G  +R+++E+AAR
Sbjct: 415 TGGRVLIDGQDLRDVTQASLRRAIGIVPQDTVLFNDTIGYNIAYGRPGA-SRQEVERAAR 473

Query: 456 QAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515
            A   +F++++  G DT +GE G  LSGG++QRVAIAR +L+D  +LILDEATSALD+ +
Sbjct: 474 LAAIHDFVQSLKNGYDTQVGERGLKLSGGEKQRVAIARTILKDPAILILDEATSALDSHT 533

Query: 516 ERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
           ER IQ AL ++ + +T LVIAHRLST+  AD ILV+D G + E G H DLL  +G YA L
Sbjct: 534 EREIQGALRDVSRGRTTLVIAHRLSTVIDADRILVLDGGRVAESGSHDDLLRAEGLYAAL 593

Query: 576 HRIQ 579
            R Q
Sbjct: 594 WRKQ 597