Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., ABC transporter ATP-binding protein/permease from Rhodopseudomonas palustris CGA009

 Score =  275 bits (703), Expect = 4e-78
 Identities = 195/587 (33%), Positives = 293/587 (49%), Gaps = 28/587 (4%)

Query: 12  TFKRLWTYI----RLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE------S 61
           T   LW YI    R      VV  I L+I A A T ++        +    A+      S
Sbjct: 30  TLMHLWPYIWPGDRSDLKMRVVWAIVLLIAAKAATLIVPFTFKWATDALTGADTAPIEPS 89

Query: 62  NFLRILPFMILGLMFVRGLSGFASSYCLSWVSG-------NVVMQMRRRLFNHFMHMPVR 114
           N+   L    L L    GL     +    W  G       + V ++  R F H   + +R
Sbjct: 90  NWTLWLIASPLALTASYGLVRALMAVLTQWRDGIFAKVAMHAVRKLAYRTFVHMHDLSLR 149

Query: 115 FFDQESTGGL---LSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVL 171
           F  +  TGGL   L R     E +       LV  + E + ++ +L   F   W+  +  
Sbjct: 150 FHLERKTGGLTRVLERGRLGIEVIVRMVILQLVPTIIELSLVMAVLLWQF--DWRY-VAA 206

Query: 172 IVVAPVVAFAISFVSKRFR-KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRF 230
           ++V  V     ++ +  +R  I R M  +       A   L  ++ V  +G +E E KR+
Sbjct: 207 VMVTVVFYMLYTYKATEWRIGIRRRMNDSDSDANQKAIDSLLNYETVKYFGAEEREAKRY 266

Query: 231 DKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSA 290
           DK        ++   ++ ++ +    +I +  L A + + +        T G F ++ + 
Sbjct: 267 DKSMRHYEDASVATYTSLAVLNAGQAVIFTFGLTATMLMCASGVRNGTNTVGDFVMINAM 326

Query: 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVT 348
           M  L +PL  +  V  E ++ +   + +F ++  + E ++  G        G V  +DV 
Sbjct: 327 MIQLYQPLNFMGMVYREIKQAIIDIEKMFAVLSRKPEVEDRAGAKPLAVEAGTVRFEDVK 386

Query: 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
           F Y    +P L  ++F +P GKTVA+VG SG+GKSTI+ L  R YDV  G I +DG D+R
Sbjct: 387 FAYD-PARPILKGLNFEVPAGKTVAIVGPSGAGKSTISRLLFRLYDVSGGRILIDGQDIR 445

Query: 409 DYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ 468
               T+LR    +V Q+  LFNDTI  NI Y    + T  ++E+AA+ A    FI+  P+
Sbjct: 446 SVTQTSLRAAIGMVPQDTVLFNDTIRYNIRYG-RWDATDAEVEEAAKTAQIDAFIKASPK 504

Query: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
           G DT +GE G  LSGG++QRVAIAR +L+  P+L+LDEATSALD+ +E  IQ AL+ + +
Sbjct: 505 GYDTEVGERGLKLSGGEKQRVAIARTVLKAPPILVLDEATSALDSHTEHEIQGALERVAQ 564

Query: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
           N+T LVIAHRLSTI  ADEI+V+D+G I ERG H+ LLA  G YA +
Sbjct: 565 NRTSLVIAHRLSTIVGADEIIVLDQGRIAERGTHSQLLAAGGLYASM 611