Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 602 a.a., ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  285 bits (729), Expect = 4e-81
 Identities = 199/592 (33%), Positives = 318/592 (53%), Gaps = 41/592 (6%)

Query: 11  QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFM 70
           + F  LW   + +    VV+ +A++I A     ++++  P+L +G  ++ +     +P +
Sbjct: 22  RVFPYLWPEGQAWVKYRVVAALAVLILAK----LVAVYTPMLYKGAVDSLAG--EGVPPL 75

Query: 71  ILGLMFVRGLSGFASSYCLSWVSGNVVMQMR------------RRL----FNHFMHMPVR 114
            LG +      G   +Y ++ +  N   Q+R            RRL    F H   + +R
Sbjct: 76  ALGAV------GLTVAYGMARILTNGFQQLRDAVFAPVGQRALRRLALETFRHIHRLSMR 129

Query: 115 FFDQESTGGLLSRITYDSEQVAGATSRALVSI---VREGASIIGLLTLMFWNSWQLSLVL 171
           +     TGGL   I    + V       L SI   V E A +  +L ++F + W L +V 
Sbjct: 130 YHITRKTGGLSRIIERGVKGVEFLLRFLLFSIGPLVLELALVAIILAVLF-DIWYLVVVA 188

Query: 172 IVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD 231
           + +   V F  +    R  K+ R M          A   L  ++ V  +G ++ E +R+D
Sbjct: 189 VTIGFYVWFTFAITEWRV-KLRREMNKQDTDANQKAIDSLLNYETVKYFGAEDRETERYD 247

Query: 232 KVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM 291
               +  +  +K   + +  +    ++ +  L AV+ +A++   +  LT G F +V + M
Sbjct: 248 VAMRAYAKAALKTAYSLAFLNFGQSLVITGGLVAVMVMAAIGVQQGNLTVGDFVMVNAYM 307

Query: 292 FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE---RDNGKYEAERVNG-EVDVKDV 347
             +  PL  L +V  E ++ +     +F L++ + +   RDN K    +VNG  + +++V
Sbjct: 308 IQITVPLNFLGTVYREIRQSLVDMGEMFDLIEQDPDVKDRDNAK--VLQVNGGAITLENV 365

Query: 348 TFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407
            F Y   ++  L  VSF +  G TVA+VG +GSGKSTI  L  RFYDV  G++ +DG DV
Sbjct: 366 EFGYDS-DRQILKGVSFEVAAGHTVAIVGSTGSGKSTIGRLLFRFYDVTRGALRIDGQDV 424

Query: 408 RDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467
           RD    +L     +V Q+  LFNDTI  NIAY   G  T+E++EQAAR A   +FI  +P
Sbjct: 425 RDVTQKSLHAAIGVVPQDTVLFNDTIRYNIAYGRAGA-TQEEVEQAARDAQIHDFIMRLP 483

Query: 468 QGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ 527
           +G +T +GE G  LSGG++QRV IAR LL++ P+L+LDEATSALD+++E+ I+ AL    
Sbjct: 484 EGYETQVGERGLKLSGGEKQRVGIARTLLKNPPILLLDEATSALDSDTEQEIKEALSRAG 543

Query: 528 KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
           + +TV+ IAHRLST+ +AD+I+V+++GEI ERG H +LLA+DG YA L + Q
Sbjct: 544 QGRTVITIAHRLSTVAEADQIIVLEQGEIAERGTHDELLAKDGRYAHLWQRQ 595