Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., lipid ABC transporter ATPase/inner membrane protein (RefSeq) from Shewanella loihica PV-4

 Score =  285 bits (730), Expect = 3e-81
 Identities = 169/577 (29%), Positives = 307/577 (53%), Gaps = 17/577 (2%)

Query: 19  YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVR 78
           ++R Y+  ++ + + L I + A   +   ++ ++DEGF       L  +  +++G+  + 
Sbjct: 39  FLRPYRGKVIAAIVFLFIGSLAWLSLGQGVRLMVDEGFLRENGERLNEIILLVIGITALS 98

Query: 79  GLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
             + F   Y ++W+   V   +R ++++H + +   F+ +  TG ++SR T D+  +   
Sbjct: 99  SSAIFCRFYLMTWLGERVSADIRLKVYDHLLKLSPGFYARLRTGEVISRFTADATLLQSV 158

Query: 139 TSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
              +L   +R   +++G L +M   S +L+ ++++  P+V   I F  ++ R++SR  Q 
Sbjct: 159 VGSSLSMALRASVTVVGGLVMMAITSLKLTALVLLAVPLVLGPIFFFGRKVRELSRKSQD 218

Query: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
            +G + +  ++ L     V +Y  ++ +R+ F +   ++ +     +  ++I   ++  +
Sbjct: 219 RVGDLGAYVDESLHEIHTVQAYCHEDRDRQLFSERVEAVMEAARGRIKYRAILISLVMFL 278

Query: 259 ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTL 318
           + LA+  + ++ + D +   +TPG  +        +   +  ++ V  E QR   A + L
Sbjct: 279 SILAIALITWVGAKDVMSEAITPGELSAFMFYAVMVAGAVATISEVIGEIQRAAGATERL 338

Query: 319 FGLMDLETERDNGKYEAE---RVNGEVDVKDVTFTY-------QGKEKPALSHV------ 362
             L++   +            +V GE+ ++ V F+Y         +E  A + V      
Sbjct: 339 IELVETPIDIPLAPKPVSLPAKVRGELSLEQVRFSYPVQASADSAEEMEAQAGVEVIRGL 398

Query: 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALV 422
           S  I  G+ VALVG SG+GKST+  L  RFY +DSG I LDG D+   +  +LR+ +ALV
Sbjct: 399 SLHIAPGERVALVGASGAGKSTLFELLQRFYVLDSGVIALDGIDIASLRPQDLRQQYALV 458

Query: 423 SQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482
            Q   +F  ++  N+ Y    + + E+++ A   A A EFI +  +G  T +GE G  LS
Sbjct: 459 PQESVIFATSVLENVRYGRP-DASLEEVQAACVAARADEFIADFSEGYQTYLGERGVRLS 517

Query: 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTI 542
           GGQ+QR+AIARA+L D PVL+LDEATSALD  SE+ ++ ALD L + +T L+IAHRL+T+
Sbjct: 518 GGQKQRIAIARAILADRPVLLLDEATSALDAVSEQKVKQALDVLMQGRTTLIIAHRLATV 577

Query: 543 EQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
             AD ILV+D+GE+I  G H +L+  +  Y +   +Q
Sbjct: 578 LNADRILVMDKGELIASGTHGELMQSNSLYREFASLQ 614