Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  609 bits (1571), Expect = e-179
 Identities = 307/591 (51%), Positives = 428/591 (72%), Gaps = 22/591 (3%)

Query: 13  FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFG--------------- 57
           F RL TY+   K  L +S   LV+    D   I  +KP +D+GF                
Sbjct: 13  FLRLLTYLVPLKGVLFLSVFGLVLYGLVDATFIYSIKPFIDQGFASNVPTTPGLVEGVDL 72

Query: 58  ------NAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHM 111
                 N++S+ L+  PF+++GL  +RGL+ F S+Y +S++S  ++M MR+++F H++ +
Sbjct: 73  GMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVFEHYLRL 132

Query: 112 PVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVL 171
           PV + D ES+G L+SR+T+D+EQ+A A+  AL++IVR+G ++IG+L +MF+NSW+LSL +
Sbjct: 133 PVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITVIGMLGVMFYNSWKLSLCI 192

Query: 172 IVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD 231
           ++V P++   I+ VS++FRK+S+ +QTAMG VTS  EQM+KGHK VL +GGQ+ E +RF 
Sbjct: 193 LIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAESQRFA 252

Query: 232 KVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM 291
           KV++  R +TMKL  AQ+I+ P++ +I SLAL  VL+ +S++S+RA+LT GTF  + +AM
Sbjct: 253 KVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFATILAAM 312

Query: 292 FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTY 351
             +++P+K+LT V +EFQRG+AAC T+F ++D   E DNG +E +RV G +    V F Y
Sbjct: 313 LAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTFETKRVEGRLSFDKVNFRY 372

Query: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDY 410
             +E  AL  V F +  G+T+ALVGRSGSGKSTIA+L TRFY D+DSG I LD   +RDY
Sbjct: 373 NNQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVSLRDY 432

Query: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
           KL  LRR  ALVSQ V L NDTIA NIAYA  GE T EQI  AA+ A+A EFI NMP+G+
Sbjct: 433 KLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNMPEGI 492

Query: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530
            T +GENG  LSGGQRQR+AIARA+LRDAP+LILDEATSALDTESE+AIQ  LD L++N+
Sbjct: 493 YTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNLRQNR 552

Query: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFG 581
           T +VIAHRLST+E A++ILVVD+G+++ERG H++LLA+ G Y  L+++QFG
Sbjct: 553 TSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQMQFG 603