Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., ABC transporter-related protein (RefSeq) from Shewanella loihica PV-4

 Score =  281 bits (720), Expect = 4e-80
 Identities = 191/582 (32%), Positives = 300/582 (51%), Gaps = 13/582 (2%)

Query: 6   DESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR 65
           D+ NW   K LW Y+  +K  ++++   LV+   A   +  +LK L+D     +    + 
Sbjct: 12  DKLNWHVLKLLWPYLLEFKGRVILALACLVVAKMASVGLPFVLKQLVDTLSEASVEQMIA 71

Query: 66  ILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRL----FNHFMHMPVRFFDQEST 121
           +   ++L    +R L+   S      + G V  +  RRL    F+H   + + F  +  T
Sbjct: 72  VPIALVLAYGSLRLLNTVISEV-RDTLFGRVTERAIRRLGLSVFDHLHRLDLAFHLERRT 130

Query: 122 GGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN-SWQLSLV-LIVVAPVVA 179
           GGL   I   +  V+      + +IV     I  ++ ++ +N  W  +L+ L  V   + 
Sbjct: 131 GGLSRDIERGTSGVSFLMRFMVFNIVPTLLEIGLVVGILLYNYGWAFALITLSAVVAYIL 190

Query: 180 FAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
           F+I F ++      R    A     + A   L  ++ V  +  +  E +++D        
Sbjct: 191 FSI-FATEWRTGFVREAAMADSQSNTRAIDSLLNYETVKYFNNEAYESEQYDHALERWEV 249

Query: 240 QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLK 299
              K   +    +    +I SLA+  +L LA+    +  +T G F ++ + M  L  PL 
Sbjct: 250 AKRKNRLSLFALNAGQALIISLAMTLMLALAATQVSQGAMTIGDFVLINAFMMQLFMPLN 309

Query: 300 ALTSVTSEFQRGMAACQTLFGLMDLETERDNGK--YEAERVNGEVDVKDVTFTYQGKEKP 357
            L  V  E +  +A  + +F L+D + + ++G      +   G +  + V+F Y   ++P
Sbjct: 310 FLGFVYREIRGALANIERMFSLLDRQPKIEDGPDATSPQIAQGSLKFEGVSFRYG--DRP 367

Query: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRR 417
            LS VSF IP G  VA+VG SG+GKSTI  L  RFY+   G+I +DGHD +      LR 
Sbjct: 368 ILSDVSFEIPAGHKVAIVGDSGAGKSTIVKLLFRFYETQQGTITIDGHDTKALTQHALRS 427

Query: 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477
             A+V Q+  LFND++  NI Y   G  + EQ++ A   AH   F+  + +G  T +GE 
Sbjct: 428 AIAIVPQDTVLFNDSLMENIRYGLPGA-SDEQVKAAIELAHLSNFVSQLSEGWHTKVGER 486

Query: 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537
           G  LSGG++QRVAIARA+L+ +P+L+ DEATS+LD+ SE+AI  AL E+ K  T LVIAH
Sbjct: 487 GLKLSGGEKQRVAIARAILKGSPLLVFDEATSSLDSHSEQAILNALKEMAKGHTSLVIAH 546

Query: 538 RLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
           RLST+  AD+ILV+ +G+I+ERG H  LLA DG Y +L  +Q
Sbjct: 547 RLSTVVDADQILVLSQGKIVERGDHQSLLAADGLYKKLWTVQ 588