Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 595 a.a., ABC transporter, ATP-binding/permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  291 bits (746), Expect = 4e-83
 Identities = 180/569 (31%), Positives = 305/569 (53%), Gaps = 8/569 (1%)

Query: 16  LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLM 75
           +W +++ Y+  +V + + L+I + A   +   ++ ++DEGF    +  L  +   +L + 
Sbjct: 19  IWQFLKPYRPRVVAAIVFLLIGSLAWLSLGQGVRLMVDEGFIKDNAQRLNEIILFVLVIT 78

Query: 76  FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQV 135
            V G + F   Y ++W+   V   +R  ++N  + +   F+ +  TG ++SR T DS  +
Sbjct: 79  AVSGTAVFCRFYLMTWLGERVSADIRLAVYNQLLKLSPAFYAKVRTGEVISRFTADSTLL 138

Query: 136 AGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRN 195
                 +L   +R G ++IG L +M   S +++L++++  P+V   +SF  ++ R ++R 
Sbjct: 139 QTVVGSSLSMALRSGVTVIGGLAMMGITSVKMTLLVLLAVPLVLGPVSFFGRKVRTLARE 198

Query: 196 MQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD-KVSNSMRQQTMKL-VSAQSIADP 253
            Q  +  + +  ++ L     V +YG ++ +R  F+ +V + M   + ++   A  I+  
Sbjct: 199 SQDRVADLGAYVDETLHEIHTVQAYGHEDKDRSLFNGRVEDVMTAASGRIRYRALLISSV 258

Query: 254 VIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMA 313
           +   IA++AL  V ++ + D +  ++T G  +        +   +  ++ V  E QR   
Sbjct: 259 MFLSIAAIAL--VTWVGAHDVMSGKMTGGELSAFMFYAVMVAGAVATISEVVGEIQRASG 316

Query: 314 ACQTLFGLMDLETERDNG---KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGK 370
           A + L  L + E +       K    +V GE+ +  + F Y  + +  LS ++  I  G+
Sbjct: 317 AAERLIELAETEVDIPAPLVPKTLPTKVRGELQLHQLNFHYPEQTQLVLSDLNLVINAGE 376

Query: 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN 430
            VALVG SG+GKST+  L  RFY   SGSI LDG D+      +LR  FALV Q+  +F 
Sbjct: 377 RVALVGPSGAGKSTLFQLLQRFYVPSSGSILLDGIDIAALSPQDLRAQFALVPQDSVIFA 436

Query: 431 DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490
            ++  N+ Y       +E I+ A   A A EFI    +G  T +GE G  LSGGQ+QR+A
Sbjct: 437 TSVLENVRYGRVDASEQEVID-ACIAARAHEFISEFSEGYQTYLGERGVRLSGGQKQRIA 495

Query: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
           IARA+L D P+L+LDEATSALD  SE+ ++ ALDEL   KT L+IAHRL+T+  AD I+V
Sbjct: 496 IARAILADRPILLLDEATSALDALSEQKVKQALDELMAGKTTLIIAHRLATVINADRIIV 555

Query: 551 VDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
            D+G I+  G+H DL+  +  Y +   +Q
Sbjct: 556 FDKGRIVASGKHQDLIKTNALYREFATLQ 584