Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  612 bits (1578), Expect = e-179
 Identities = 306/591 (51%), Positives = 425/591 (71%), Gaps = 19/591 (3%)

Query: 10  WQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGN----------- 58
           W  FKRL  Y++  K   ++S + L++    D   IS + P +D+GF +           
Sbjct: 10  WTVFKRLMGYLKPMKGMFLLSVVGLIVYGLVDAAFISFIGPFIDKGFSSSAPAISNGIAL 69

Query: 59  -------AESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHM 111
                  A++  L + P +++ +  +RG + F S+Y +S++S  ++M MR+++F H++ +
Sbjct: 70  PTSQGFHADNQVLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLSL 129

Query: 112 PVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVL 171
           PV + D+E+TG L+S++T+D+EQ+A A+  AL+SIVR+  +IIG+L LMF+NSW+LSL +
Sbjct: 130 PVSYMDKENTGNLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYNSWKLSLCI 189

Query: 172 IVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD 231
           +V+ P++   I+ VS+RFRK+S+ +QTAMG V+++ EQM+KGHK VL++GGQE E  RF 
Sbjct: 190 LVIGPIMGVVITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETARFA 249

Query: 232 KVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM 291
           K+++  R Q MKL  AQ+++ P+I +I S AL  VL+ AS+DS++A+LT GTF  +  AM
Sbjct: 250 KINDRNRHQNMKLAVAQAVSQPLIMVIGSFALAFVLYAASLDSMKADLTAGTFATILGAM 309

Query: 292 FGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTY 351
             +++P+K LT V +EFQRG+AAC T+F L+D   E D G Y   R  G +   +V+F+Y
Sbjct: 310 MAMLQPIKNLTRVNAEFQRGIAACTTVFELLDTVPESDTGTYTVARAKGNLRFDNVSFSY 369

Query: 352 QGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDY 410
           +G+E+ AL  + F + QG+T+ALVGRSGSGKSTIA+L TRFY  ++SG I LD   + DY
Sbjct: 370 EGQERRALEKIDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSIYDY 429

Query: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
            L +LR   ALVSQ V LFNDTIANNIAYA  GE TREQI +AA  AHAMEFIE +P GL
Sbjct: 430 SLKSLRSQVALVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLPDGL 489

Query: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530
           DT +GENG  LSGGQRQR+AIARA+LRDAPVLILDEATSALDTESE+AIQ  LD L++N+
Sbjct: 490 DTQVGENGVLLSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNR 549

Query: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQFG 581
           T +VIAHRLSTIE AD+ILVVD+G I+ERG H  LL   G YA+L+++QFG
Sbjct: 550 TSVVIAHRLSTIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQFG 600