Pairwise Alignments

Query, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  299 bits (765), Expect = 2e-85
 Identities = 195/583 (33%), Positives = 317/583 (54%), Gaps = 15/583 (2%)

Query: 6   DESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLR 65
           D+ NW   K LW Y+  YK  + ++   L++   A   +  +LK ++D    N  +  L 
Sbjct: 12  DKLNWHVIKLLWPYLLEYKGRVALAMSCLIVAKLASVGLPFILKDVVDTLDANKTAQTLS 71

Query: 66  ILPFMILGLMFVRGLS---GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTG 122
           +   ++L    VR L+   G         V+   + ++   +F+H   + + F  +  TG
Sbjct: 72  VPIGLVLAYGAVRLLTVITGEIRDTLFGRVTERAIRRLGLAVFDHLHRLDLDFHLERRTG 131

Query: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA- 181
           GL   I   +  V+      + +IV     I  ++ + F+N + ++   I    V+A+  
Sbjct: 132 GLSRDIERGTSGVSFLMRFMVFNIVPTLLEIAMVIGIFFFN-YGVAFASITFISVLAYIW 190

Query: 182 ISFVSKRFR-KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQ 240
            S ++  +R +  R+   A     + A   L  ++ V  +  ++ E +R+D+  +     
Sbjct: 191 FSVIATEWRTEYVRDAAKADSLSNTRAIDSLLNYETVKYFNNEKYESERYDQALDQWEVA 250

Query: 241 TMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKA 300
             K   +    +    +I ++A+ A++ LA+      E+T G F ++ + M  L  PL  
Sbjct: 251 KRKNRLSLFALNGGQALIIAIAMTAMMALAAYKVTHNEMTLGDFVLINAFMMQLFMPLNF 310

Query: 301 LTSVTSEFQRGMAACQTLFGLMD----LETERDNGKYEAERVNGEVDVKDVTFTYQGKEK 356
           L  V  E +  +A  + +F L+D    +  + D   +E +R  GE+  ++V+F+Y   ++
Sbjct: 311 LGFVYREIRGALANIERMFSLLDKHPSIVDKPDALDFEPKR--GELSFENVSFSYD--DR 366

Query: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
           P L +VSF +  GK VA+VG SG+GKST+  L  RFYDV+ G I +DG D+R      LR
Sbjct: 367 PILRNVSFKVAAGKKVAVVGDSGAGKSTLIKLLFRFYDVEQGRILIDGQDIRQLTQDALR 426

Query: 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
           R  A+V Q+  LFND++  NI Y      + + +  A + AH  +FI ++ QG DT +GE
Sbjct: 427 RAIAIVPQDTVLFNDSLVENIRYGRPNA-SDDDVRHAIKLAHLEDFIASLSQGWDTKVGE 485

Query: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536
            G  LSGG++QRVAIARA+L+ +PVL+ DEATS+LD+ SE+AI +AL E+ K  T LV+A
Sbjct: 486 RGLKLSGGEKQRVAIARAILKGSPVLVFDEATSSLDSRSEQAILSALREVAKGHTSLVVA 545

Query: 537 HRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
           HRLSTI  AD+I+V+ +GEI+E+G H+ LLAQDG YA+L RIQ
Sbjct: 546 HRLSTIVDADQIVVLSKGEIVEQGNHSSLLAQDGLYAKLWRIQ 588