Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 712 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  154 bits (388), Expect = 2e-41
 Identities = 103/356 (28%), Positives = 179/356 (50%), Gaps = 17/356 (4%)

Query: 253 LEEVSSRYQSLAEKAGEQT---LLSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLE 309
           L  V +  Q+L +    Q    +  + +  +++A + +L+  +V   +++ L Q+  +L+
Sbjct: 336 LNAVMADLQALQKDLDHQRQADIFGMAIVGLVIAGIGLLVIWLVGHGIARPLKQMVAMLD 395

Query: 310 KLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGL-------VHVVQDRSVALSGDA 362
            ++ G+      L+S++ DE   +A   N     L G+       V  V D S   +  A
Sbjct: 396 DIAQGEGDLTRRLVSDRADELGAIARGFNTFLSKLQGMITQVVTSVQSVSDSSEHTADIA 455

Query: 363 VALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGS 422
           +  NQ +          M +  ++A+A  E++ T Q V+ +    A  +  +  AA++G 
Sbjct: 456 IRTNQGVHKQ-------MSEIDQVATAVHEMTATAQDVARNATQAAQAASHADQAASQGM 508

Query: 423 KVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAA 482
           +++     S+  +   +  A   +Q L + S  +++++  I GIAEQTNLLALNAAIEAA
Sbjct: 509 QIVRDTSTSIGALAVEIGKAVGVVQTLAKDSENINAILTAIRGIAEQTNLLALNAAIEAA 568

Query: 483 CAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQS 542
            AGEQGRGFAVVADEVR+LA +T  A  EI   I+ +++ + +V+  M  S+   +E   
Sbjct: 569 RAGEQGRGFAVVADEVRNLAQKTQQATEEIQTMIQQLQQGTRDVVRVMEDSQTRTDESVQ 628

Query: 543 KGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALES 598
              +A QAL+ ITQ          +I S+ +E SA +  +  ++  I      + S
Sbjct: 629 HAAKAAQALETITQAVSVINDMNTQIASAAEEQSAVADDINRNVINIGQVANEVAS 684



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 70/337 (20%), Positives = 131/337 (38%), Gaps = 49/337 (14%)

Query: 197 MSQSYAMLDLYKAEIEQFKTTFLR--VSELSQQVKDIEKNLLSSEATAQGVIESTAQRLE 254
           + Q  AMLD    +I Q +    R  VS+ + ++  I +   +  +  QG+I      ++
Sbjct: 387 LKQMVAMLD----DIAQGEGDLTRRLVSDRADELGAIARGFNTFLSKLQGMITQVVTSVQ 442

Query: 255 EVSSRYQSLAEKAGEQTLLSILVACVILAVLTVLLFMMVSFS-LSKALTQIGRVLEKLSS 313
            VS   +  A+ A             I  V T +  M  +   +++  TQ  +       
Sbjct: 443 SVSDSSEHTADIAIRTNQGVHKQMSEIDQVATAVHEMTATAQDVARNATQAAQAASHADQ 502

Query: 314 GDLSQRLALISNKKDEFNQLAFAVNKSC----------ENLGGLVHVVQDRSVALSGDAV 363
              SQ + ++ +       LA  + K+           EN+  ++  +  R +A   + +
Sbjct: 503 A-ASQGMQIVRDTSTSIGALAVEIGKAVGVVQTLAKDSENINAILTAI--RGIAEQTNLL 559

Query: 364 ALNQAIDNLVRGQS---------DVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKAS 414
           ALN AI+    G+          +V +  Q+   ATEE+    QQ+      V  V + S
Sbjct: 560 ALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATEEIQTMIQQLQQGTRDVVRVMEDS 619

Query: 415 ----------TLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIIN 464
                        AA+  + I+ A+  + ++ + + SAA      E+ SA  D +   + 
Sbjct: 620 QTRTDESVQHAAKAAQALETITQAVSVINDMNTQIASAA------EEQSAVADDINRNVI 673

Query: 465 GIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSL 501
            I +  N +A  A   +A +     G   +A++ R L
Sbjct: 674 NIGQVANEVASGADESSAASA----GLTKLAEQQRRL 706



 Score = 33.9 bits (76), Expect = 3e-05
 Identities = 35/169 (20%), Positives = 70/169 (41%), Gaps = 34/169 (20%)

Query: 449 LEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNA 508
           L+Q  A +D   DI  G  + T  L  + A E    G   RGF     +++ +  + V +
Sbjct: 387 LKQMVAMLD---DIAQGEGDLTRRLVSDRADEL---GAIARGFNTFLSKLQGMITQVVTS 440

Query: 509 VSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERI 568
           V  +S + E     +A++ +                        R  QG  +  S+ +++
Sbjct: 441 VQSVSDSSE----HTADIAI------------------------RTNQGVHKQMSEIDQV 472

Query: 569 FSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESL 617
            +++ E++AT+Q +A + +Q + A    +   +Q     R+  T   +L
Sbjct: 473 ATAVHEMTATAQDVARNATQAAQAASHADQAASQGMQIVRDTSTSIGAL 521