Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  158 bits (399), Expect = 8e-43
 Identities = 103/350 (29%), Positives = 177/350 (50%), Gaps = 4/350 (1%)

Query: 263 LAEKAGEQTLLSILVACVILAVLTVLLFMMVSF--SLSKALTQIGRVLEKLSSGDLSQRL 320
           LAE+  ++ LL  L+   +  VL ++ ++   F  S   +L  +G++++K+++GD++ R 
Sbjct: 313 LAERLEQKRLLMTLLISAVAIVLVLVAYLYAGFYASTRASLRSLGKIMDKVAAGDMTARY 372

Query: 321 ALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVM 380
            + S  +DE  +L    N +   +  L+  V      +   A  +        +  S+  
Sbjct: 373 QVQS--RDELGELGQVFNTTVAQVRELIERVGQTVAEVDRQAQRVESVSGESNQTVSEQR 430

Query: 381 DQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQ 440
            Q +++A+A  E+S T Q+V+ S E     +++       G  ++ A +G ++ + S ++
Sbjct: 431 GQIEQVATAMNEMSATAQEVASSAEAAVGSAQSVNEETVSGRALVVAQVGGIQRLASEIE 490

Query: 441 SAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRS 500
            +   I QL   S  +  V+D+I  IAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR 
Sbjct: 491 QSVQVINQLAGDSKAISQVLDVIKTIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRG 550

Query: 501 LAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDE 560
           LA RT  + +EI   I  ++      +  M+ S    E+   +  Q  QAL+ I      
Sbjct: 551 LAQRTQKSTAEIEQMIARLQNGVGAAVKTMHASHALAEDTVGQSGQVEQALENILGAVGL 610

Query: 561 AASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREV 610
              Q ++I ++ ++ +A +  +  ++  I+ A Q            SRE+
Sbjct: 611 IVDQNQQIAAAAEQQTAVAHDIDRNIVAINEAGQRTAEGAGHTEQASREL 660



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 53/268 (19%), Positives = 112/268 (41%), Gaps = 44/268 (16%)

Query: 209 AEIEQFKTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRL--------------- 253
           AE+++       VS  S Q    ++  +   ATA   + +TAQ +               
Sbjct: 406 AEVDRQAQRVESVSGESNQTVSEQRGQIEQVATAMNEMSATAQEVASSAEAAVGSAQSVN 465

Query: 254 -EEVSSRYQSLAEKAGEQTLLSILVACVIL--------AVLTVLLFMMVSFSLSKALTQI 304
            E VS R   +A+  G Q L S +   V +          ++ +L ++ + +    L  +
Sbjct: 466 EETVSGRALVVAQVGGIQRLASEIEQSVQVINQLAGDSKAISQVLDVIKTIAEQTNLLAL 525

Query: 305 GRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQD----------R 354
              +E   +G+  +  A+++   DE   LA    KS   +  ++  +Q+           
Sbjct: 526 NAAIEAARAGEQGRGFAVVA---DEVRGLAQRTQKSTAEIEQMIARLQNGVGAAVKTMHA 582

Query: 355 SVALSGDAVA----LNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANV 410
           S AL+ D V     + QA++N++     ++DQ Q++A+A E+ +     +  ++  +   
Sbjct: 583 SHALAEDTVGQSGQVEQALENILGAVGLIVDQNQQIAAAAEQQTAVAHDIDRNIVAINEA 642

Query: 411 SKASTLAAA---EGSKVISAAIGSLREV 435
            + +   A    + S+ +S  +G L+++
Sbjct: 643 GQRTAEGAGHTEQASRELSQLVGRLQQL 670