Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  162 bits (409), Expect = 4e-44
 Identities = 108/328 (32%), Positives = 179/328 (54%), Gaps = 2/328 (0%)

Query: 264 AEKAGEQTLLSILVACVILAVLTVL-LFMMVSFSLSKALTQIGRVLEKLSS-GDLSQRLA 321
           A  AG   + ++L A  I A L  L L    + + + AL  + R+  +    GD      
Sbjct: 158 AGAAGGVVVGTVLAASPIAATLAGLALGGAAAVAAATALLPLSRLARQARQVGDNPVSQL 217

Query: 322 LISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMD 381
           + + ++DE  Q+ FA+       G +V  + D S  LS  A  L  A+    +  +    
Sbjct: 218 IYTGRRDEIGQIEFAMKMLETEAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQ 277

Query: 382 QTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQS 441
           +T  +A+A +++S + Q+V+ + +  A V+  +   AA+G +V+     S+  + + +Q 
Sbjct: 278 ETDLIATAIQQMSASVQEVALNAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQ 337

Query: 442 AASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSL 501
           AA  I QLE  S ++  V+D+I+GIAEQTNLLALNAAIEAA AGEQGRGFAVVADEVR L
Sbjct: 338 AAEVIHQLENHSQEISRVLDVIHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQL 397

Query: 502 AVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEA 561
           A RT  A ++I   I +++  + E +  M +S +  E   S  +QA  +L  I    +E 
Sbjct: 398 ASRTSLATTDIQRMIGSLQTGAREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEI 457

Query: 562 ASQTERIFSSIKELSATSQAMAESMSQI 589
           ++ + +I +++ + S+  + +++S+  I
Sbjct: 458 SAMSSQIAAAVDQQSSVGEEISQSIVSI 485