Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  158 bits (400), Expect = 5e-43
 Identities = 96/305 (31%), Positives = 168/305 (55%)

Query: 314 GDLSQRLALISNKKDEFNQLAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLV 373
           GD      + + ++DE+ Q+AFA+       G +V  + D S  LS  A  L  A+D+  
Sbjct: 212 GDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDASRQLSQHAHELLGAMDSST 271

Query: 374 RGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLR 433
           +  S    +T ++A+A  +++ + Q+V+++ +  A  +  +    A G++V++    ++ 
Sbjct: 272 QSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRADSETATGTEVVNRTGAAIG 331

Query: 434 EVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAV 493
           ++   +Q A   I +LE  S  +  V+D+I GIAEQTNLLALNAAIEAA AGEQGRGFAV
Sbjct: 332 QLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGFAV 391

Query: 494 VADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQR 553
           VADEVR+LA RT  +  EI+G I  ++  + + +  M +S +   +      QA ++L  
Sbjct: 392 VADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSREQAMQSVEHAAQAARSLHG 451

Query: 554 ITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETR 613
           I     E +  +++I +++++ SA S+ + +++  I        +   + R ++  V   
Sbjct: 452 INSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIRGGSDHHVANGLRSRQSASGVAEL 511

Query: 614 AESLE 618
           A S+E
Sbjct: 512 ANSME 516