Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  165 bits (417), Expect = 5e-45
 Identities = 109/364 (29%), Positives = 197/364 (54%), Gaps = 10/364 (2%)

Query: 236 LSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGE------QTLLSILVACVILAVLTVLL 289
           L+ +A   G+  +T+ +L E+  +    A +  E      Q+  S+    +ILA + V L
Sbjct: 144 LAGDAAVAGIDRATSAQLSELVKQLGDAAVQRSETIRADAQSTASLGPLIMILASVVVAL 203

Query: 290 FMM--VSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQLAFAVNKSCENLGGL 347
           F +  V+  + + +  +   + +LS G  + R+   +++ DE  +LA A N   + L   
Sbjct: 204 FSLWLVNRRIIEPIRSLIEHIARLSQGKFADRVD--ASRADELGRLAVAANVLRDFLADT 261

Query: 348 VHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVV 407
              +Q  +  L   +  L+     +  G  +   +T ++A+A  E+S T Q+VS      
Sbjct: 262 FTRLQQSTSNLDSASGELSAIARLMADGTREQFSRTDQVATAMHEMSATAQEVSRHAAEA 321

Query: 408 ANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIA 467
           A  + A+  +A +G  V+ A I ++ +V   + S A  I++LE  S ++  V+++I GIA
Sbjct: 322 AQAADAADHSAQQGEAVMRATIATITDVSGEIASTAEVIRRLEGDSGRIGKVLEVIRGIA 381

Query: 468 EQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVI 527
           +QTNLLALNAAIEAA AG+ GRGFAVVADEVR+LA RT  + +EI   I+T++  ++  +
Sbjct: 382 DQTNLLALNAAIEAARAGDAGRGFAVVADEVRTLAQRTAESTAEIHQIIDTVQTGASNAV 441

Query: 528 LFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMS 587
             +   +   E+G  +  +A   LQRIT+  +       +I ++ +E +A ++ ++ +++
Sbjct: 442 RAIESGQARSEQGVGQVTEAGLMLQRITEAVEAIRDMNRQIATAAEEQTAVAEDISRNIT 501

Query: 588 QISS 591
           +I+S
Sbjct: 502 EITS 505



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 38/238 (15%)

Query: 363 VALNQAIDNLVRGQSDVMDQTQRLASATEEVSLTTQQVSHSLEVVANVSKASTLAAAEGS 422
           VA  + +D  +   SD +     +A        T+ Q+S  ++ + +       AA + S
Sbjct: 127 VAYRKGLDAYIAADSDPLAGDAAVAGIDRA---TSAQLSELVKQLGD-------AAVQRS 176

Query: 423 KVISAAIGSLREVGSILQSAASHIQQLEQASAKVDSVMDIINGIAEQTNLLALNA---AI 479
           + I A   S   +G ++   AS +  L         +++ I  + E    L+       +
Sbjct: 177 ETIRADAQSTASLGPLIMILASVVVALFSLWLVNRRIIEPIRSLIEHIARLSQGKFADRV 236

Query: 480 EAACAGEQGRGFAVVADEVRSLAVRTVNAVSEISGTIETMKKESAEVILFMNQSEQTMEE 539
           +A+ A E GR  AV A+ +R     T   + + +  +++   E + +   M         
Sbjct: 237 DASRADELGR-LAVAANVLRDFLADTFTRLQQSTSNLDSASGELSAIARLM--------- 286

Query: 540 GQSKGNQAMQALQRITQGTDEAASQTERIFSSIKELSATSQAMAESMSQISSAMQALE 597
                            GT E  S+T+++ +++ E+SAT+Q ++   ++ + A  A +
Sbjct: 287 ---------------ADGTREQFSRTDQVATAMHEMSATAQEVSRHAAEAAQAADAAD 329