Pairwise Alignments

Query, 626 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  161 bits (407), Expect = 1e-43
 Identities = 127/474 (26%), Positives = 236/474 (49%), Gaps = 17/474 (3%)

Query: 159 VTINSDFQAMIKAQQNYLLQPNEQNLRLFNRA---LAGFVS--MSQSYAMLDLYKAEIEQ 213
           V++    ++++K +  +  +  EQ++RL  R    LA  +S  ++ + A +D ++ ++  
Sbjct: 212 VSMRGSLESLLKIELQFRAEL-EQSIRLLKRRSPELAARISDPITAATAAMDSFRGDLHA 270

Query: 214 F-KTTFLRVSELSQQVKDIEKNLLSSEATAQGVIESTAQRLEEVSSRYQSLAEKAGEQTL 272
           + K T   V +  Q +      ++S    AQ  I++  Q   E+++RY +L  +      
Sbjct: 271 YVKGTEFSVQQ-GQALSARGNVVVSGLYKAQDEIQTALQN--ELNTRYDALVLQREV--- 324

Query: 273 LSILVACVILAVLTVLLFMMVSFSLSKALTQIGRVLEKLSSGDLSQRLALISNKKDEFNQ 332
             ++  CVI+ +L +  F  +  +L   +  +  V  +L  GDLS R+A++S  KDE   
Sbjct: 325 --VIAMCVIMGLLLLYAFCSIYRALRLTIDSLLGVTRRLGEGDLSARVAVVS--KDEVAD 380

Query: 333 LAFAVNKSCENLGGLVHVVQDRSVALSGDAVALNQAIDNLVRGQSDVMDQTQRLASATEE 392
           +A  +N   +     +  +   S  L+  A  L  +I    +  +    +T+++A+A  E
Sbjct: 381 IANGLNLMADAFASSISHMDRTSYELTDVASRLGASIGLAKQSMNAQQAETEQVATAINE 440

Query: 393 VSLTTQQVSHSLEVVANVSKASTLAAAEGSKVISAAIGSLREVGSILQSAASHIQQLEQA 452
           ++ +   V+ + E  A  +  +  A+  G +++  A  +++ +   ++ +A  +Q L   
Sbjct: 441 MTASVADVAQNTEGAALAADEANTASRNGLRIMHQAHSTIQALAEEVELSAQKVQALALH 500

Query: 453 SAKVDSVMDIINGIAEQTNLLALNAAIEAACAGEQGRGFAVVADEVRSLAVRTVNAVSEI 512
           S  +  V+ +I+ IA+QTNLLALNAAIEAA AGEQGRGFAVVADEVR+LA RT  +  EI
Sbjct: 501 SQSIGGVIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTEEI 560

Query: 513 SGTIETMKKESAEVILFMNQSEQTMEEGQSKGNQAMQALQRITQGTDEAASQTERIFSSI 572
            G I+ ++  +   +  M   +Q      S  + A  +L  I+QG +       +I S+ 
Sbjct: 561 RGIIQQLQSATDAAVQQMQAGQQKAHACISAASDASGSLSSISQGVERIVEMNTQIASAA 620

Query: 573 KELSATSQAMAESMSQISSAMQALESYNTQLRVTSREVETRAESLEHDCRRFTL 626
            +  A S+ +  ++ +I ++   L        VT+ E+   A  + +   RF L
Sbjct: 621 VQQHAVSEDINRNVMEIRNSSGTLMLGIDNNAVTADELARVASDMRNVVARFKL 674